Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P24
         (974 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical ...    63   3e-10
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    49   4e-06
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AL132951-5|CAC44307.1|  426|Caenorhabditis elegans Hypothetical
           protein Y67H2A.6 protein.
          Length = 426

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
 Frame = +2

Query: 158 IMNVSEHWTRLKAQEG-FPQTVVGALIGKQXGRNIEVMNXFELVXSMXXXXXXXXXXYYX 334
           IM +SEH++R K Q+G   + V GA++G+Q GR +E +N F L                 
Sbjct: 21  IMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKMETEEMAEPVTFSTEH 80

Query: 335 L--KXEQFKQVFSDMDFLGWYTTGD----APSERDI------AV-HRQICDINECPVMLM 475
           L  + +Q+ +VF ++  +G Y  G+     P E+ +      AV + +     +  + L 
Sbjct: 81  LLQRADQYLEVFPELQVIGLYCAGEDDNLTPEEKPLLSKLTNAVRNSEKAGQIDATLFLK 140

Query: 476 LNP-AGRNGDQLPVVXYESVIDVVNGRATMLLAPLTYTLAAEEAERIGVDHVARVSS 643
           LN        +LP+  +E+  DV +        P+ + L +EE+ER+GV+H+A++S+
Sbjct: 141 LNSITAGTTRKLPLFAFEA--DVTDQEKH---KPIEWILVSEESERVGVNHIAKLST 192


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
 Frame = +2

Query: 158 IMNVSEHWTRLKAQEGFPQTVVGALIGK-QXGRNIEVMNXFELVXS---MXXXXXXXXXX 325
           +++V +H+ R+   +   + VVG L+G  +  + +++ N F +                 
Sbjct: 48  LLSVVDHFNRVSKTQSVKR-VVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMD 106

Query: 326 YYXLKXEQFKQVFSDMDFLGWYTTGDAPSERDIAVHRQICDINECPVMLMLNPAGRNGDQ 505
           Y       F +V +    +GWY TG    + DIA++ Q+      PV+++++   +N   
Sbjct: 107 YLESMYGMFYKVAAKEKIVGWYHTGPKLHKNDIAINEQLKRFCPNPVLVIIDAEPKN-IG 165

Query: 506 LPVVXYESVIDVVNGRATML--LAPLTYTLAAEEAERIGVDHVAR 634
           LP   Y  V +V +     +     +   + AEEAE +GV+H+ R
Sbjct: 166 LPTEAYIEVQEVHDDGTPPIKTFEHVPSDIGAEEAEEVGVEHLLR 210


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 615  PILSASSAANVYVKGARSIVARPLTTSITD 526
            P++S S+    +++GA+ +  R  + S+TD
Sbjct: 2816 PLISTSTLTTTFIRGAQDVTGRQGSVSVTD 2845


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 615  PILSASSAANVYVKGARSIVARPLTTSITD 526
            P++S S+    +++GA+ +  R  + S+TD
Sbjct: 2825 PLISTSTLTTTFIRGAQDVTGRQGSVSVTD 2854


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,429
Number of Sequences: 27780
Number of extensions: 258675
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2531861596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)