Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P23
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    28   2.1  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    27   3.6  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    26   6.3  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    26   8.3  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   8.3  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   8.3  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -2

Query: 658 VFHSSYYSFEGIYHSKHHFFIKIINHCICFSIKIYRACYQLQDRVLTSFRFAAP 497
           +  + +YS  G   S  H F  I +H +  ++ +Y  C+ +  +VL     A P
Sbjct: 329 ILFALFYSISG---STLHSFRSIKSHLVLSALYLYIGCFHMHTQVLNRMSSALP 379


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -2

Query: 667 ECIVFHSSYYSFEGIYHSKHHFFIKIINHCICFSIK 560
           E +   S Y S      S+ HF    +NH +C +++
Sbjct: 123 EMLEMGSHYLSITAFIESRSHFEYGFVNHALCAALR 158


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 658 VFHSSYYSFEGIYHSKHHFFIKIINHCICF 569
           + HSSYYS    Y+     + +   HC+ +
Sbjct: 156 LIHSSYYSVSADYYKAKADYAQYYRHCLLY 185


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 INNMYTRSDEKISEIVENNVIQTAKQELRTIISTNKYDINM 328
           +NN  T S EK  E V   V   A + +   + T KYD+N+
Sbjct: 1   MNNSITDSVEKKPEQVSFEVQPNALRPVAFHVFTRKYDLNI 41


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 3/145 (2%)
 Frame = +2

Query: 230  DEKISEIVENNVIQTAKQELRTIISTNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLS 409
            D    E  EN  +   K+      + NK  +N  IE LN +    +  +  +   K+ L+
Sbjct: 662  DSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSKESLA 721

Query: 410  DIVLMSIYHHNC---SYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANT 580
            D +      HN    S  + +  F+ +L     SS     +    Q +T   NF+   N 
Sbjct: 722  DYLSNLKERHNDELDSLNKKLREFEGILSS--NSSLKSEIEERNNQYVTLRENFDSLQNA 779

Query: 581  MIYDLDKEMVLRMINSLERVIT*MK 655
            ++   DK++    +N L + I  +K
Sbjct: 780  IMETFDKQVTHCSVNHLVQQIRKLK 804


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 571 FSIKIYRAC-YQLQDRVLTSFRFAAPKNKLQEPIKASNNFPIRTIV 437
           +S  +  AC + L  RVL +F+  AP+ K    ++  +N P R +V
Sbjct: 113 YSESVAEACGFDLNTRVL-AFKLDAPEAKKPVDLRTQHNRPQRPVV 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,485
Number of Sequences: 5004
Number of extensions: 62176
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)