Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P23
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0003 - 4862220-4863428                                           29   6.6  
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804...    28   8.7  
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876...    28   8.7  

>03_02_0003 - 4862220-4863428
          Length = 402

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 INMIIEHLNTKDWNQEKLIAFLDLLKKKLSDIVLMSIYHHNCSYGEVITSFD 475
           I   +   NT+   +EK I +LD+   +  DI  + IYH    Y ++  + D
Sbjct: 20  ITQKVTGFNTETTTKEKPIGYLDVFVHQARDIHNICIYHKQDVYAKLCLTSD 71


>05_06_0193 +
           26279105-26279229,26279725-26279833,26280362-26280437,
           26280527-26281472,26281564-26281615,26281945-26282067,
           26282144-26282219,26282308-26282492,26282615-26282806,
           26282895-26282963,26283745-26283954,26285602-26285751,
           26286283-26286344,26286428-26286503,26286575-26286745
          Length = 873

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
 Frame = +2

Query: 143 MDIIFKKINSIEHFDIICNEIINN---MYTRSDEKISEIVENNVIQTAKQELRTIISTNK 313
           +D++ +KI S+E    +CN  +++   +Y  S  +  +I+   V +T K+ L    S+  
Sbjct: 293 VDLLQEKIKSVEERFQVCNHEMHSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMP 352

Query: 314 YDINMIIEHLNTKDWNQEKLIAFLD 388
            ++   I  L    W  EK I++ D
Sbjct: 353 SELWSRIS-LLIDGWLLEKRISYND 376


>03_02_0476 +
           8768182-8768313,8768734-8768833,8768949-8768986,
           8769102-8769191,8769465-8769695
          Length = 196

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 664 CIVFHSSYYSFEGIYHSKHHF 602
           C +  S+Y + EGI + KHHF
Sbjct: 140 CAISPSNYAALEGILYCKHHF 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,060,680
Number of Sequences: 37544
Number of extensions: 284903
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)