Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P23
         (893 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC019826-1|AAH19826.1|  183|Homo sapiens COMM domain containing ...    36   0.20 
BC015145-1|AAH15145.1|  183|Homo sapiens COMM domain containing ...    36   0.26 
BC008371-1|AAH08371.1|  183|Homo sapiens COMM domain containing ...    36   0.26 
AY542163-1|AAS22245.1|  183|Homo sapiens COMMD8 protein.               36   0.26 
AK000509-1|BAA91216.1|  183|Homo sapiens protein ( Homo sapiens ...    36   0.26 
AF182421-1|AAG14957.1|  132|Homo sapiens MDS022 protein.               36   0.26 
M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth f...    31   5.6  
J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth f...    31   5.6  

>BC019826-1|AAH19826.1|  183|Homo sapiens COMM domain containing 8
           protein.
          Length = 183

 Score = 35.9 bits (79), Expect = 0.20
 Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
 Frame = +2

Query: 260 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 436
           +V++   +  + I+  N  D   I + LN     +QE ++  +   K ++   +   I  
Sbjct: 53  HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111

Query: 437 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 616
            + +    +  FDW +KL+L S +    + P+L L    +  NGE      ++ +E +  
Sbjct: 112 ISSAQ---LQDFDWQVKLLLSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167

Query: 617 MINSLE 634
           +I SLE
Sbjct: 168 LIQSLE 173


>BC015145-1|AAH15145.1|  183|Homo sapiens COMM domain containing 8
           protein.
          Length = 183

 Score = 35.5 bits (78), Expect = 0.26
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = +2

Query: 260 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 436
           +V++   +  + I+  N  D   I + LN     +QE ++  +   K ++   +   I  
Sbjct: 53  HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111

Query: 437 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 616
            + +    +  FDW +KL L S +    + P+L L    +  NGE      ++ +E +  
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167

Query: 617 MINSLE 634
           +I SLE
Sbjct: 168 LIQSLE 173


>BC008371-1|AAH08371.1|  183|Homo sapiens COMM domain containing 8
           protein.
          Length = 183

 Score = 35.5 bits (78), Expect = 0.26
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = +2

Query: 260 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 436
           +V++   +  + I+  N  D   I + LN     +QE ++  +   K ++   +   I  
Sbjct: 53  HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111

Query: 437 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 616
            + +    +  FDW +KL L S +    + P+L L    +  NGE      ++ +E +  
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167

Query: 617 MINSLE 634
           +I SLE
Sbjct: 168 LIQSLE 173


>AY542163-1|AAS22245.1|  183|Homo sapiens COMMD8 protein.
          Length = 183

 Score = 35.5 bits (78), Expect = 0.26
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = +2

Query: 260 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 436
           +V++   +  + I+  N  D   I + LN     +QE ++  +   K ++   +   I  
Sbjct: 53  HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111

Query: 437 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 616
            + +    +  FDW +KL L S +    + P+L L    +  NGE      ++ +E +  
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167

Query: 617 MINSLE 634
           +I SLE
Sbjct: 168 LIQSLE 173


>AK000509-1|BAA91216.1|  183|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20502 fis, clone KAT09323. ).
          Length = 183

 Score = 35.5 bits (78), Expect = 0.26
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = +2

Query: 260 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 436
           +V++   +  + I+  N  D   I + LN     +QE ++  +   K ++   +   I  
Sbjct: 53  HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111

Query: 437 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 616
            + +    +  FDW +KL L S +    + P+L L    +  NGE      ++ +E +  
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167

Query: 617 MINSLE 634
           +I SLE
Sbjct: 168 LIQSLE 173


>AF182421-1|AAG14957.1|  132|Homo sapiens MDS022 protein.
          Length = 132

 Score = 35.5 bits (78), Expect = 0.26
 Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
 Frame = +2

Query: 260 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 436
           +V++   +  + I+  N  D   I + LN     +QE ++  +   K ++   +   I  
Sbjct: 2   HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 60

Query: 437 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 616
            + +    +  FDW +KL L S +    + P+L L    +  NGE      ++ +E +  
Sbjct: 61  ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 116

Query: 617 MINSLE 634
           +I SLE
Sbjct: 117 LIQSLE 122


>M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth
           factor receptor protein.
          Length = 1106

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 392 LKKKLSDIVLMSIYHHNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGE 571
           L +K  D+ L   Y H   +  +     ++ K  +G  E  +  Y + +L  SSIN +  
Sbjct: 160 LHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 219

Query: 572 A 574
           A
Sbjct: 220 A 220


>J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth
           factor receptor protein.
          Length = 1106

 Score = 31.1 bits (67), Expect = 5.6
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 392 LKKKLSDIVLMSIYHHNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGE 571
           L +K  D+ L   Y H   +  +     ++ K  +G  E  +  Y + +L  SSIN +  
Sbjct: 160 LHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 219

Query: 572 A 574
           A
Sbjct: 220 A 220


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,652,893
Number of Sequences: 237096
Number of extensions: 1794011
Number of successful extensions: 6770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6770
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)