Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P22
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    28   1.6  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    27   2.7  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   4.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.3  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   6.3  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   8.4  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 548 LSTYKKELEALQRVDATFIVPAYSPEFEAWKASLETSEAGIVSPVSAARR 697
           L +YK EL  L  V +++  PAY    E+  A + +S    +  ++A R+
Sbjct: 688 LVSYKNELSELMYVTSSYSQPAYMEFLESLLAVITSSSVHPIQTLTAPRQ 737


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 536 HRRTV*LLC-RLHHLAPDSGPYSL 468
           H + +  LC +  HLAPDSGPY L
Sbjct: 219 HTKPIMALCWQPLHLAPDSGPYLL 242


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 263 SWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMK 442
           S + S+KTKS +++   KK  DE  S      S+    TS  +  T K   PE+ +  + 
Sbjct: 421 SLILSSKTKSPQLFNNEKK--DESYSGFSNTNSYAIEETSRALMGTSKTRKPENKSKYLI 478

Query: 443 KS 448
           K+
Sbjct: 479 KN 480


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 705  ESSRLAADTGDTIPASDV-SRLAFQASNS 622
            E++ +A D GDT PAS   S  +F A+NS
Sbjct: 977  ENTPMAKDAGDTAPASGFKSGFSFGANNS 1005


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/108 (17%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
 Frame = +2

Query: 407  LDVPESPANAMKKSISTFIGQVSTVLNPEPDDE-----DDTEVILSSGDTTMLSTYKKEL 571
            +D+ +     +    +  + + +  +N  PD +     +D+E + ++  + ++    +EL
Sbjct: 2022 IDLDDEKRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTREL 2081

Query: 572  EALQRVDATFIVPAY-SPEFEAWKASLETSEAGI-VSPVSAARRLDSK 709
            E  + VD T I P + + + E W   +   +  + +  ++  R L +K
Sbjct: 2082 EEDEEVDTTVIAPYFPAQKTEHWWLVISDDKTLLAIKKITLGRSLTTK 2129


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 482 LNPEPDDEDDTEVILSSGDTTMLSTYKKELEAL 580
           + P P DED  ++ L   DT+ ++    ELE L
Sbjct: 329 IQPLPTDEDIKKIPLIEDDTSFMNVNPDELEEL 361


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 560 KKELEALQRVDATFIVPAYSPEFEAWKASLETSE 661
           KK+ + L  ++A   VP      EAW+ SL++ E
Sbjct: 9   KKQYDDLADIEAQNNVPNTQEVLEAWQESLDSDE 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,442,798
Number of Sequences: 5004
Number of extensions: 68630
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)