Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P22
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.6  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   8.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 741 QACRTAPSARDFESSRLAA 685
           QAC T+P+    ESS  AA
Sbjct: 28  QACTTSPATASLESSLSAA 46


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 448 YQHIHRSSEYGPESGAXXXXXXXSHTV 528
           + H H  S+Y P  G+       +HT+
Sbjct: 317 HPHQHHPSQYHPHRGSSPHHQHGNHTM 343


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 383 NVIGKTLKLDVPESPANAMKKSISTFIGQVSTVL 484
           +VIGK +K  +PE   N   +  S  IG  +T++
Sbjct: 47  DVIGKKIKELLPEVLNNHCNRCTSRQIGIANTLI 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,762
Number of Sequences: 438
Number of extensions: 5068
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)