Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_P20
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 118 1e-27
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 32 0.13
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 29 0.67
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 29 0.89
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 3.6
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 27 4.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 6.3
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 6.3
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 8.3
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 26 8.3
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 8.3
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 118 bits (284), Expect = 1e-27
Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 7/238 (2%)
Frame = +2
Query: 110 SVYK*NKMAKVKNKRNSGLADKVHSKRKAEINK--KKINPFEVHVNREKIKVLGKKSKHD 283
S+ + N + NK++ + + H R+A++ K N F+ + K V G++ K
Sbjct: 14 SIRQANLGTRPNNKKSRTRSTESHEDRQAKVQKIQSDFNLFDRQFTKRKFDVGGRRVKGT 73
Query: 284 KGLPGVSRAKAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVK 463
+G PGVSR + R+ T+G E+K N++ IDRR GE N LS E+KM+ RF+ E+ +
Sbjct: 74 EGKPGVSRGVGEELRRRTIGAELKKRNRSGAIIDRRFGENNPHLSVEEKMLERFSREQ-Q 132
Query: 464 QHNKKSIYNLADDEILTHRGQTLEQIEKFDDPRSD-DEDEEGKAYGGLDYDFVAEGHFGG 640
+ +K+ +YNL +++LTH + L I+ F++P DE EE L+ + V HFGG
Sbjct: 133 RRSKRELYNLDAEDVLTHGNRPLSDIDSFEEPGFGLDEGEE------LNDEVVRRMHFGG 186
Query: 641 GMLSKTDS-KDGAKSHK---DLIEQLIAXXXXXXXXXXXXXXQTLDLTEKLXSEWKDL 802
S ++ K+G +HK +++ ++IA + D EKL + +DL
Sbjct: 187 FEDSDAENEKEGEGAHKSKREVMSEIIAKSKHYKAERQAEKERYEDEREKLDEQMEDL 244
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.9 bits (69), Expect = 0.13
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Frame = +2
Query: 137 KVKNKRNSGLADKVH--SKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRA 310
KV +R + L +++ +KRK E KKI E +++K L K+ + +
Sbjct: 563 KVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAE 622
Query: 311 KAVQKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSIYN 490
+A QK E E + + R +K +L + + + ER K+ K+
Sbjct: 623 QAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQ--Q 680
Query: 491 LADDEILTHRGQTLEQIEK 547
AD E + + E+ EK
Sbjct: 681 EADREKMAREQRLREEEEK 699
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 29.5 bits (63), Expect = 0.67
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Frame = +2
Query: 359 MNKTNTFIDRRIGEKNNQLSAE-DKMIA-----RFAAERVKQHNKKSI--YNLADDEILT 514
+ K +F++ I E N + + DK + R++ + V K+S YN ++++ T
Sbjct: 809 LEKIESFLENSIAELQNSVREDFDKQTSSLAQLRYSIQNVAHAQKESEVKYNELNEQVKT 868
Query: 515 HRGQTLEQIEKFDDPRSDDE-DEEGKAYGGLDYDFVAEGHFGGGMLSKTDSKDGAKSHKD 691
G +EKF+D + +++ E Y AE + + S T +KD K
Sbjct: 869 LEGYVETVLEKFNDLKIENKVPETAPDVVPSSYPPAAESNV--SVSSDTSTKDVEKQEPS 926
Query: 692 LIEQ 703
EQ
Sbjct: 927 SAEQ 930
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 29.1 bits (62), Expect = 0.89
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Frame = +2
Query: 197 EINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRKETLGTE-MKLMNKTN 373
E NK H R K K++K + G ++ A K +LG E + +N+T
Sbjct: 298 ESNKDNNTSTSKHKKRPKRLSKFKQAKLETKKSG-NKDHATSSEKLSLGNESIHSINETR 356
Query: 374 TFIDRRIGEKNNQLSAEDKMIARFAAERVKQHNKKSI-YNLADD-EILTHRGQTLEQIEK 547
+ +N++ E+ M+ Q+ +++ Y+ D E + Q +E+ +
Sbjct: 357 SSSIEEPDNADNKIVEEEPMLLPVPTTAQGQNVLEAVQYDGLDSLEDMEALIQEMEEEGE 416
Query: 548 FDDPRSDDEDEEGKAYG 598
DD +EDE G G
Sbjct: 417 LDDNSESEEDEHGMTIG 433
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 398 EKNNQLSAEDKMIARFAAERVKQHNKKSIYNLADD--EILTHRGQTLEQ 538
E NN+ A+D+ + E ++ ++ S +++ D EI+ GQ +EQ
Sbjct: 105 EMNNRDDADDEFLGFSGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQ 153
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 470 NKKSIYNLADDEILTHRGQTLEQIEKFDDPRSDDEDE 580
NKK +LAD E + T E +E + + DEDE
Sbjct: 8 NKKQYDDLADIEAQNNVPNTQEVLEAWQESLDSDEDE 44
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 6.3
Identities = 19/95 (20%), Positives = 46/95 (48%)
Frame = +2
Query: 140 VKNKRNSGLADKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAV 319
V+ + +S + V S + + +I E + E+++ G++ + ++ +P +
Sbjct: 324 VQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEME--GEEEEEEEEVPNYESENEL 381
Query: 320 QKRKETLGTEMKLMNKTNTFIDRRIGEKNNQLSAE 424
+ + L + + ++F+D + E+NN LSAE
Sbjct: 382 EDKVGDLSLSLGV---ASSFVDEMLRERNN-LSAE 412
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 6.3
Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Frame = +2
Query: 155 NSGLADKVHSKR--KAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKR 328
N+ K+ S R ++ + + + + E +K +K + ++ K Q
Sbjct: 212 NTATRSKLPSMRLTTVQVPSRSVQEIIIEKDPELLKRQAEKYEEERSRARRRLEKRKQLN 271
Query: 329 KETLGTEMKLMNKTNTFIDRRIGEKNNQLSAEDKM--IARFAAERVKQHN--KKSIYNLA 496
GT + + ++ + R + N++ D+M + R E Q+ K +
Sbjct: 272 NYQNGTGEEEEDYSSFYGPRSTYSEQNEIIDSDRMDRLKRIKQEGAGQYRGYNKDLEENE 331
Query: 497 DDEILTHRGQTLEQIEKFDDPRSDDEDEE 583
+D++ + E+ E+ ++ D+EDEE
Sbjct: 332 EDDLGDFIAEEEEEEEQEEEQEEDEEDEE 360
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 170 DKVHSKRKAEINKKKINPFEVHVNREKIKVLGKKSKHDKGLPGVSRAKAVQKRK 331
DK SK +KK + + + +E++ KK+K+D+ S K+ KRK
Sbjct: 701 DKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDRLSNKKSTKKSKSKRK 754
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 8.3
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = -1
Query: 460 HSFSGKPRNHFIFSRQLVVFLTNTTINKCVRLIHQLHFCAQCXXXXXXXXXSRYTRQTFI 281
H + +P+NHF+ +++ + + I + ++H+L + C R+ Q I
Sbjct: 81 HDKTKRPKNHFVALKRIYATVLPSRIQTELEMLHELR-GSDC--VLNMITAVRHQDQVLI 137
Query: 280 MLRFLPQ-NFNFFTIHMHLKRIDFLFVDL 197
+L F+ F F + L I DL
Sbjct: 138 VLPFIQHAEFRDFYMKYSLPEIGAYLRDL 166
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 146 NKRNSGLADKVHSKRKAEINKKKINPFEVHVNR 244
N NS LADK+ R E +K +++ H+NR
Sbjct: 763 NVLNSELADKLAQIRHLESDKMELDKLVHHLNR 795
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,839
Number of Sequences: 5004
Number of extensions: 53907
Number of successful extensions: 189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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