Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P18
         (931 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    65   6e-13
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    65   6e-13
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   5.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = +2

Query: 380 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGM--EGSITVNGMERNLSSF 553
           K ILK+V G    GEL AI+G SGAGK+TLLN LT + +S +   G   VNG+  +  + 
Sbjct: 91  KHILKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGIPVSSKTL 150

Query: 554 RKLSCYIMQDNQLHGNLTVEEAMGVATSLKLPSSTTRDEKEMLTETIL 697
              S Y+ QD+   G LTV+E +     L++    +  ++    E ++
Sbjct: 151 ASQSAYVQQDDLFIGTLTVKEHLIFQALLRMDRDISYSQRMARVEEVI 198



 Score = 34.7 bits (76), Expect = 0.001
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 744 LSGGQKKRLSIALELVNNPPIMXL--R*AYIRSWTAXRXSQCISAA*RRSPXXGRTXIWT 917
           +SGG+KKRLS A E++ NP +M      + + S+ A    Q +    +     G+T I T
Sbjct: 220 ISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVL----KEMAMTGKTVICT 275

Query: 918 IHQ 926
           IHQ
Sbjct: 276 IHQ 278


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 65.3 bits (152), Expect = 6e-13
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
 Frame = +2

Query: 380 KTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGM--EGSITVNGMERNLSSF 553
           K ILK+V G    GEL AI+G SGAGK+TLLN LT + +S +   G   VNG+  +  + 
Sbjct: 91  KHILKNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGIPVSSKTL 150

Query: 554 RKLSCYIMQDNQLHGNLTVEEAMGVATSLKLPSSTTRDEKEMLTETIL 697
              S Y+ QD+   G LTV+E +     L++    +  ++    E ++
Sbjct: 151 ASQSAYVQQDDLFIGTLTVKEHLIFQALLRMDRDISYSQRMARVEEVI 198



 Score = 34.7 bits (76), Expect = 0.001
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 744 LSGGQKKRLSIALELVNNPPIMXL--R*AYIRSWTAXRXSQCISAA*RRSPXXGRTXIWT 917
           +SGG+KKRLS A E++ NP +M      + + S+ A    Q +    +     G+T I T
Sbjct: 220 ISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVL----KEMAMTGKTVICT 275

Query: 918 IHQ 926
           IHQ
Sbjct: 276 IHQ 278


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 651 VPLRETKKKC*PKRSFTPLSLM 716
           +P R T+K C  KR  TP++ +
Sbjct: 776 IPGRITQKSCSTKRYVTPVNTL 797


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,839
Number of Sequences: 336
Number of extensions: 4283
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)