Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P18
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   5.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 368 KSNVKTILKSVSGRLRSGELTAIMGPSGAGKSTLLNILTGYKTSGME-GSIT 520
           K   K  L + S  ++   +  IMG    GK+TLL+ L     +  E G IT
Sbjct: 128 KDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGIT 179


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 537 RSIPLTVILPSIPEVLYPVSMLRSVDFPAPDGPMMAVSSP 418
           ++IP   ILP IP    PV  +      +P    ++ S P
Sbjct: 780 QAIPRIPILPMIPVYCVPVPQVNDSTILSPVREKLSSSQP 819



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 345  LTKCKREGRAMSKRSSSLFRVGSVPASSRPSWVRRVPGSRRFSTYSQD 488
            + KC    R  S+ +S     GS+ A S  S     PG    S  S D
Sbjct: 878  MNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSND 925


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/73 (19%), Positives = 23/73 (31%)
 Frame = +1

Query: 235 SLRQEGKREGDDHTDPAQDPQSPTX*AARGSGIYGLDLQSARGKEEQCQNDPQVCFGSAP 414
           S   E  RE    T    + +  +    +G   Y     +  G  +   +  Q C G   
Sbjct: 757 STSSEESREEKATTSLEAEKREKSEHCEKGKEYYAASFHTDIGNSQSLAHQDQCCPGFTM 816

Query: 415 FRRAHGHHGSVGC 453
            +     H + GC
Sbjct: 817 TKSGKTRHQNTGC 829


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 269 ITPTQHKTLSHLPXRQPVDLAFTDLTYKVQEGRKSNVKTILKSV 400
           +TP     +S +P   P+DLA       +   RK   K IL+S+
Sbjct: 435 LTPPSSNPVSPVPSPDPLDLAIPVRETLILPPRK-RCKMILESM 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,379
Number of Sequences: 438
Number of extensions: 5254
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)