Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P17
         (915 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SUK6 Cluster: Glycoprotein homolog; n=5; Brassicaceae...    30   1.7  
UniRef50_Q3HYB9 Cluster: Proline-and threonine-rich protein; n=2...    30   1.8  
UniRef50_O01900 Cluster: Putative uncharacterized protein; n=2; ...    27   3.5  
UniRef50_O97214 Cluster: Putative uncharacterized protein L4830....    29   3.7  
UniRef50_Q6CDQ5 Cluster: Similarity; n=2; Saccharomycetales|Rep:...    34   5.8  
UniRef50_Q64467 Cluster: Glyceraldehyde-3-phosphate dehydrogenas...    28   8.5  

>UniRef50_Q9SUK6 Cluster: Glycoprotein homolog; n=5;
           Brassicaceae|Rep: Glycoprotein homolog - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 473

 Score = 29.9 bits (64), Expect(2) = 1.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -2

Query: 704 PXKKPPXPXGXGXFXXXXXPPPPPPXP 624
           P K  P P     F     PPPPPP P
Sbjct: 265 PRKSNPIPNLASEFHPSPPPPPPPPPP 291



 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 647 PPPPPPXPXXKKKKXXXXFK 588
           PPPPPP P    K     F+
Sbjct: 331 PPPPPPPPVEYYKSPPTKFR 350


>UniRef50_Q3HYB9 Cluster: Proline-and threonine-rich protein; n=2;
           Coccidioides|Rep: Proline-and threonine-rich protein -
           Coccidioides posadasii
          Length = 281

 Score = 30.3 bits (65), Expect(2) = 1.8
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = -2

Query: 767 PXPXPXXXXXXXFXXXXXEXXPXKKPPXPXGXGXFXXXXXPPPPPPXP 624
           P P P             +  P   PP P           PPPPPP P
Sbjct: 104 PPPPPPPPPPAPTTTQAPQYPPPPPPPPPPAPTTSKAAPPPPPPPPPP 151



 Score = 29.5 bits (63), Expect(2) = 2.4
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -2

Query: 704 PXKKPPXPXGXGXFXXXXXPPPPPPXP 624
           P + PP P           PPPPPP P
Sbjct: 85  PPQSPPAPTTTAQAPPPPPPPPPPPPP 111



 Score = 24.6 bits (51), Expect(2) = 2.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 647 PPPPPPXPXXKK 612
           PPPPPP P   K
Sbjct: 128 PPPPPPAPTTSK 139



 Score = 24.2 bits (50), Expect(2) = 1.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 647 PPPPPPXPXXKK 612
           PPPPPP P   K
Sbjct: 149 PPPPPPAPPAPK 160


>UniRef50_O01900 Cluster: Putative uncharacterized protein; n=2;
            Caenorhabditis|Rep: Putative uncharacterized protein -
            Caenorhabditis elegans
          Length = 1621

 Score = 27.1 bits (57), Expect(2) = 3.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 647  PPPPPPXPXXKKK 609
            PPPPPP P  +KK
Sbjct: 1390 PPPPPPLPSEEKK 1402



 Score = 26.2 bits (55), Expect(2) = 3.5
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -2

Query: 704  PXKKPPXPXGXGXFXXXXXPPPPPP 630
            P   PP P           PPPPPP
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPP 1363


>UniRef50_O97214 Cluster: Putative uncharacterized protein L4830.10;
           n=3; Leishmania|Rep: Putative uncharacterized protein
           L4830.10 - Leishmania major
          Length = 816

 Score = 28.7 bits (61), Expect(2) = 3.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 692 PPXPXGXGXFXXXXXPPPPPPXP 624
           P  P G G       PPPPPP P
Sbjct: 635 PMIPLGSGGSAPPRLPPPPPPPP 657



 Score = 24.6 bits (51), Expect(2) = 3.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 647 PPPPPPXPXXKK 612
           PPPPPP P   K
Sbjct: 681 PPPPPPPPTSSK 692


>UniRef50_Q6CDQ5 Cluster: Similarity; n=2; Saccharomycetales|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 664

 Score = 33.9 bits (74), Expect = 5.8
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -2

Query: 704 PXKKPPXPXGXGXFXXXXXPPPPPPXP 624
           P   PP P G G       PPPPPP P
Sbjct: 505 PPPPPPPPPGPGPAAAGGPPPPPPPPP 531


>UniRef50_Q64467 Cluster: Glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific; n=287; cellular organisms|Rep:
           Glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific - Mus musculus (Mouse)
          Length = 440

 Score = 27.9 bits (59), Expect(2) = 8.5
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 704 PXKKPPXPXGXGXFXXXXXPPPPPPXP 624
           P   PP       F     PPPPPP P
Sbjct: 67  PPPPPPPQIEPDKFEEAPPPPPPPPPP 93



 Score = 24.2 bits (50), Expect(2) = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 647 PPPPPPXPXXKKK 609
           PPPPPP P   +K
Sbjct: 91  PPPPPPPPPPLQK 103


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,833,784
Number of Sequences: 1657284
Number of extensions: 6361568
Number of successful extensions: 53635
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40128
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 83621356644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)