Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P14
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    28   2.0  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   2.0  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   2.0  
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    28   2.0  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   4.6  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   6.1  

>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 475 ALPE-NCNPEHCRISXCPLTAC 537
           ALP  + NP  C IS CPL AC
Sbjct: 241 ALPTTHGNPVECDISRCPLNAC 262


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 156 GIPTEPPSRSGLRTGAYSGRSPDG 227
           G+P  P   SG   G Y GR+P G
Sbjct: 423 GVPFSPSMPSGSSRGGYHGRNPGG 446


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 165 LVSQDEWQTETFLLYFRMLKYQVISQFVRTQQHSFRELAIKS 40
           ++ Q+   T  FLL    ++Y  IS F+R Q  ++++L ++S
Sbjct: 407 VMDQENSLTNYFLLQNTAIQYLSISFFMRQQSKAYKKLLLRS 448


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 211 DDLLTAVITPTMSRDYYR-PWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEIS 378
           D  +   I  ++S++Y + P+K +  A     +  T ++   ++N D + F+PE IS
Sbjct: 107 DSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIATDSRGNIEINADNEKFNPEVIS 163


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 315 GDGGTDVSIGHRHLLPRPVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQTE 136
           GD GT+VS     L   P  I    W +  +Q+ V  +R+ E L  + V + ++     E
Sbjct: 207 GDRGTNVSTSGSLLDGIPPDIGSASWAEAVKQKRVNMRRRREELDDECVLVGTRVSEGHE 266

Query: 135 TFLLYFRML 109
            ++  + ML
Sbjct: 267 NYVTAYNML 275


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 144 QTETFLLYFRMLKYQVISQFVRTQQHSFRELAI 46
           QT+  L  +R   +  +  +V+ QQH  + LAI
Sbjct: 46  QTDPSLKIYRTTHFDTLKIYVKAQQHKTQNLAI 78


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 181 DQDFG--LALTPDDLLTAVITPTMSR--DYYRPWKQMAMANRDVGSTITSNKDKFQVNLD 348
           D  FG  + L+P   +T ++   ++R  DY +   +   +N D   T+T      ++N +
Sbjct: 229 DTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEE 288

Query: 349 VQHFSPEE 372
           VQ    +E
Sbjct: 289 VQQKDEQE 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,626
Number of Sequences: 5004
Number of extensions: 53214
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)