Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_P14
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 37 0.024
03_02_0483 - 8804021-8804485 37 0.024
03_02_0485 - 8808139-8808618 36 0.032
03_02_0478 + 8775892-8776377 36 0.056
01_01_0229 - 1943473-1943922 31 1.2
09_06_0236 - 21781508-21783043,21783307-21783504 29 3.7
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 29 3.7
01_01_0231 + 1951047-1951499 29 3.7
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 3.7
12_01_0946 + 9376037-9376318 29 6.5
01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054... 29 6.5
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 28 8.5
>03_02_0484 + 8805053-8805538
Length = 161
Score = 36.7 bits (81), Expect = 0.024
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 346 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPE 501
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN PE
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 502 HCRIS 516
+ S
Sbjct: 130 QIKAS 134
>03_02_0483 - 8804021-8804485
Length = 154
Score = 36.7 bits (81), Expect = 0.024
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 346 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPE 501
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN PE
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 502 HCRIS 516
+ S
Sbjct: 123 QIKAS 127
>03_02_0485 - 8808139-8808618
Length = 159
Score = 36.3 bits (80), Expect = 0.032
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 346 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPE 501
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN PE
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 502 HCRIS 516
+ S
Sbjct: 128 QIKAS 132
>03_02_0478 + 8775892-8776377
Length = 161
Score = 35.5 bits (78), Expect = 0.056
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +1
Query: 346 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPE 501
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N PE
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 502 HCRIS 516
+ S
Sbjct: 130 QIKAS 134
>01_01_0229 - 1943473-1943922
Length = 149
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Frame = +1
Query: 280 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 444
A AN V T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 38 AFANARVDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 95
Query: 445 YISR---QFTRRYALPENCNPEHCRIS 516
+ R QF RR+ LPEN + + S
Sbjct: 96 RVERSSGQFMRRFRLPENAKVDQVKAS 122
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 504 LSNLXLSSDGVLTVIAPRTPAATKNERAVPI 596
L +L +S + V++VIAP TPA + AVP+
Sbjct: 56 LQSLAVSKNDVVSVIAPNTPALYEMHFAVPM 86
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 259 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADG 396
Y+ W++ AMA + + ++ VN D + SP + T DG
Sbjct: 214 YKKWERAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDG 259
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Frame = +1
Query: 280 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 444
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 445 YISR---QFTRRYALPENCNPEHCR 510
+ R QF RR+ LPEN + +
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVK 121
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Frame = +1
Query: 280 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 444
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 445 YISR---QFTRRYALPENCNPEHCR 510
+ R QF RR+ LPEN + +
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVK 121
>12_01_0946 + 9376037-9376318
Length = 93
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 229 VITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGY 399
++T T S RPWK N D T T + + + +++ +P +I + GY
Sbjct: 2 IVTTTSSTTTTRPWKTPTRENHDNQHTPTRSHN---IQANIRQDTPPDIDFRDRHGY 55
>01_06_0474 +
29604201-29604527,29604634-29604988,29605071-29605411,
29606502-29606940,29607558-29607913
Length = 605
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 132 MSLSAIHPGIPTEPPSRSGLRTGAYSGRSPDGRHHA 239
+SL IH G+ EPPSR T S +P R A
Sbjct: 371 LSLQDIHVGLGAEPPSRPNSFTSTSSCMAPSRRSMA 406
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 259 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTAD 393
Y+ W++ AMA + + ++ VN+D + SP +V T D
Sbjct: 265 YKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVD 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,714,007
Number of Sequences: 37544
Number of extensions: 383859
Number of successful extensions: 1210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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