Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P13
         (1075 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.017
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    33   0.091
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 23/79 (29%), Positives = 24/79 (30%)
 Frame = +1

Query: 373 PPTRGHAPTAHXKPXPSXXXXDRXPPGPXPXXPXAAXSGXPXQRXRPXRGXLATXXPPSP 552
           PP R    T    P  S       PP P P  P  +    P     P      T  PP P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP-----PLGNASRTSTPPVP 418

Query: 553 TEXGXHPXXPPGXRASTGP 609
           T     P  PP    S  P
Sbjct: 419 TPPSLPPSAPPSLPPSAPP 437


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 25/96 (26%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
 Frame = +1

Query: 373 PPTRGHAPTAHXKPXPSXXXXDRXPPGPXPXXPXAAXSGXPXQRXRPXRGXLATXXPPSP 552
           PP   H P  H  P P         P P            P     P         PP  
Sbjct: 209 PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE---HMPPPPMH 265

Query: 553 TEXGXHPXXPPGXRASTGPHRTAXPXXH-PXARXPP 657
            E G H   PP      G H    P  H P    PP
Sbjct: 266 HEPGEH-MPPPPMHHEPGEHMPPPPMHHEPGEHMPP 300



 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/71 (25%), Positives = 18/71 (25%)
 Frame = +1

Query: 373 PPTRGHAPTAHXKPXPSXXXXDRXPPGPXPXXPXAAXSGXPXQRXRPXRGXLATXXPPSP 552
           PP   H P  H  P P         P P            P     P         PP  
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE---HMPPPPMH 330

Query: 553 TEXGXHPXXPP 585
            E G H   PP
Sbjct: 331 HEPGEHMPPPP 341


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +1

Query: 544 PSPTEXGXHPXXPPGXRASTGPHRTAXPXXHPXARXP 654
           P+PT    H   PP  R+S  P     P  H  +  P
Sbjct: 734 PAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTP 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.134    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,745,172
Number of Sequences: 5004
Number of extensions: 16271
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 563787506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)