Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P11
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc...    95   1e-20
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    29   0.95 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.7  

>SPCC1442.08c |cox12||cytochrome c oxidase subunit
           VIb|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 83

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 36/63 (57%), Positives = 45/63 (71%)
 Frame = +2

Query: 173 FPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFA 352
           FPN NQT+HC+QSY+D+ RC K +GE + PC  F   Y+SLCP EWV++WD QR  GTF 
Sbjct: 21  FPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFP 80

Query: 353 GRI 361
             I
Sbjct: 81  API 83


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 140 PTSKQHLSTHGFPNQNQTRHCYQS 211
           P SK+ +STHGFP+ N +   Y S
Sbjct: 400 PHSKEIMSTHGFPDNNLSIWSYSS 423


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 198  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 356
            T++ V  TST      A NT+ +  S      S P++ ST   TS P   S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 198  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 356
            T++ V  TST      A NT+    S      S P++ ST   TS P   S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 198  TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 356
            T++ V  TST      A NT+    S      S P++ ST   TS P   S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,144
Number of Sequences: 5004
Number of extensions: 34821
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)