Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P10
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   1.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   9.3  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -2

Query: 273 IKLFINLSLDINIR*RRPSSLPRTVIDNVGRSSPLAY*RTEANVYSPV 130
           ++ ++N+  DIN++ R P+S P  +ID V +   LA  +   +   PV
Sbjct: 418 LRTYMNILSDINVKIRSPTSTPTPLIDAVKQYICLALAKNVVSHVLPV 465


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +1

Query: 127  GXWAIHVGFSSSVGQRRRPTDIVNN----STWQRRRTPSS 234
            G WA + G+  S  +  +P D++ N      W R   P+S
Sbjct: 1237 GLWAANKGYLLSKSEYSKPNDLICNIVVRELWSRSGAPTS 1276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,934
Number of Sequences: 5004
Number of extensions: 25184
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)