Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_P10
(982 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.95
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.95
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 4.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 4.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 4.2
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.5 bits (68), Expect = 0.95
Identities = 24/95 (25%), Positives = 24/95 (25%)
Frame = +2
Query: 671 PPXPPGXXSXXXXFXXPXXXPXPTKKPXXPXXXXXGXXGXXXPTXXGXXPXXXPQXGGXX 850
PP PP S P P P P P G P G P G
Sbjct: 261 PPVPPPPPSVTPM--PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
Query: 851 PXKKXFXXXXGPXXXPPXXXXGPXXGXXXXXPPPP 955
P G PP G PPPP
Sbjct: 319 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 353
Score = 30.7 bits (66), Expect = 1.7
Identities = 31/120 (25%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Frame = +2
Query: 614 PPXXGXGXXXXXXPXKXKXPPXPPGXXSXXXXFXXPXXXPXPTKKPXXPXXXXXGXXGXX 793
PP G P PP PP P P P P P G
Sbjct: 278 PPTPGMTPRPPPPPSSGMWPPPPP---------PPPGRTPGPPGMPGMPPPPPPSRFGP- 327
Query: 794 XPTXXGXXPXXXP---QXGGXXPXKKXFXXXXGPXXXPPXXXX---GPXXGXXXXXPPPP 955
P G P P GG P GP PP P G PPPP
Sbjct: 328 -PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 386
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.5 bits (68), Expect = 0.95
Identities = 24/95 (25%), Positives = 24/95 (25%)
Frame = +2
Query: 671 PPXPPGXXSXXXXFXXPXXXPXPTKKPXXPXXXXXGXXGXXXPTXXGXXPXXXPQXGGXX 850
PP PP S P P P P P G P G P G
Sbjct: 271 PPVPPPPPSVTPM--PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
Query: 851 PXKKXFXXXXGPXXXPPXXXXGPXXGXXXXXPPPP 955
P G PP G PPPP
Sbjct: 329 PPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPP 363
Score = 30.7 bits (66), Expect = 1.7
Identities = 31/120 (25%), Positives = 31/120 (25%), Gaps = 6/120 (5%)
Frame = +2
Query: 614 PPXXGXGXXXXXXPXKXKXPPXPPGXXSXXXXFXXPXXXPXPTKKPXXPXXXXXGXXGXX 793
PP G P PP PP P P P P P G
Sbjct: 288 PPTPGMTPRPPPPPSSGMWPPPPP---------PPPGRTPGPPGMPGMPPPPPPSRFGP- 337
Query: 794 XPTXXGXXPXXXP---QXGGXXPXKKXFXXXXGPXXXPPXXXX---GPXXGXXXXXPPPP 955
P G P P GG P GP PP P G PPPP
Sbjct: 338 -PGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPP 396
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 438 GXPXPPPXGGXPPP 397
G P PPP GG PPP
Sbjct: 278 GSPPPPPAGGSPPP 291
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 438 GXPXPPPXGGXPPP 397
G P PPP GG PPP
Sbjct: 299 GSPPPPPAGGSPPP 312
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 438 GXPXPPPXGGXPPP 397
G P PPP GG PPP
Sbjct: 284 GSPPPPPAGGSPPP 297
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 26.6 bits (56), Expect(2) = 4.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 438 GXPXPPPXGGXPP 400
G P PPP GG PP
Sbjct: 725 GPPPPPPPGGLPP 737
Score = 21.0 bits (42), Expect(2) = 4.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 426 PPPXGGXPPP 397
PP GG PPP
Sbjct: 736 PPITGGPPPP 745
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 26.6 bits (56), Expect(2) = 4.1
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 438 GXPXPPPXGGXPP 400
G P PPP GG PP
Sbjct: 725 GPPPPPPPGGLPP 737
Score = 21.0 bits (42), Expect(2) = 4.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 426 PPPXGGXPPP 397
PP GG PPP
Sbjct: 736 PPITGGPPPP 745
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 26.6 bits (56), Expect(2) = 4.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 438 GXPXPPPXGGXPP 400
G P PPP GG PP
Sbjct: 308 GPPPPPPPGGLPP 320
Score = 21.0 bits (42), Expect(2) = 4.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 426 PPPXGGXPPP 397
PP GG PPP
Sbjct: 319 PPITGGPPPP 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,938,033
Number of Sequences: 27780
Number of extensions: 219315
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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