Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P09
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    28   1.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   6.3  

>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 321 NMLDMNHYPRXPEISYSDQDLEEDDQIYVELEK 419
           N+LD    P  PE+ Y DQ L + +QI+  +EK
Sbjct: 111 NLLDPAALPSAPEVRYEDQQLFK-NQIFNTMEK 142


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
 Frame = +3

Query: 363  SYSDQDLEED----DQIYVELEKDLQQIENA 443
            +YS  DL ED    +++Y E + D+QQ+E +
Sbjct: 2175 NYSSPDLTEDFKRMEKLYFEKKNDIQQLERS 2205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,407
Number of Sequences: 5004
Number of extensions: 68263
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)