Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P09
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451     33   0.23 
03_02_0865 - 11895257-11895340,11896004-11896069,11896297-118963...    32   0.71 
11_06_0067 - 19749542-19749736,19750078-19750260,19750535-197507...    28   8.8  

>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
          Length = 228

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 170 SPIASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQ 349
           +P AS +T  P  V     PP        PPP  + L   PQ  D  D N+ VG  PLP+
Sbjct: 123 APPASIVTAPPPPVAFRRKPPAREAPP--PPPAAEKLSPPPQQHDDSDHNKRVG--PLPR 178

Query: 350 GT 355
           G+
Sbjct: 179 GS 180


>03_02_0865 -
           11895257-11895340,11896004-11896069,11896297-11896355,
           11896470-11896557,11897158-11897328,11897406-11897564,
           11897653-11897835,11897931-11898012,11898753-11898959,
           11899099-11899170,11901948-11902055,11902460-11902506
          Length = 441

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +2

Query: 86  IVLNCFRAKVFVQRYNFQILHDIL*KKRSPIASRLTF----WPKMV-CDGPDPPENNPHE 250
           I+ N   A + V R+  Q+LH ++ K   P   R+       P  V    P PP   P  
Sbjct: 155 ILTNIVNALIAVPRFYTQVLH-LMNKMNLPAPFRMALPTPPLPSQVPAPPPPPPPPQPSA 213

Query: 251 LSPPPRHDLLMNGPQLEDSDDE 316
            + P   DL  +  +LE SD++
Sbjct: 214 ANKPHLTDLSSDESELESSDED 235


>11_06_0067 -
           19749542-19749736,19750078-19750260,19750535-19750753,
           19750867-19750922,19751160-19751211
          Length = 234

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 466 ERERGHIPKQKMCPYHHLPMTLTKES-GQLGKFRCHKSKCHTRQVARAIGTW 618
           ER R +     +  + HL M   + +    G  RC  S  H   +ARA+G W
Sbjct: 174 ERSRKNYRVVVLGGFSHLTMVAPRAAIHPTGSSRCRMSTSHWGNLARALGQW 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,312,333
Number of Sequences: 37544
Number of extensions: 427991
Number of successful extensions: 1285
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)