Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_P09
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46673-7|AAC48154.1| 811|Caenorhabditis elegans Beta-catenin/ar... 30 2.6
AF063646-1|AAC17424.1| 811|Caenorhabditis elegans beta-catenin/... 30 2.6
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 29 3.4
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as... 29 6.0
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 29 6.0
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 28 7.9
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 28 7.9
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 28 7.9
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 28 7.9
>U46673-7|AAC48154.1| 811|Caenorhabditis elegans
Beta-catenin/armadillo relatedprotein 1 protein.
Length = 811
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 221 PDPPENNPHELSPPPRHDLLMN-GPQLEDSD 310
P PP+ N ++ SPP +DL N GP SD
Sbjct: 772 PTPPQYNSYDRSPPVYNDLPSNPGPSSHSSD 802
>AF063646-1|AAC17424.1| 811|Caenorhabditis elegans
beta-catenin/armadillo homologBAR-1 protein.
Length = 811
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 221 PDPPENNPHELSPPPRHDLLMN-GPQLEDSD 310
P PP+ N ++ SPP +DL N GP SD
Sbjct: 772 PTPPQYNSYDRSPPVYNDLPSNPGPSSHSSD 802
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 221 PDPPENNPHELSPPP 265
P PPEN P E PPP
Sbjct: 481 PPPPENEPEEFPPPP 495
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 167 RSPIASRLTFWPKMVCDGPDPPENNPHELSPPPRHDLLMNGPQLEDSDDENEYVGYEP 340
R P A L P+++ + P PEN+ S PP +L P ++ GY P
Sbjct: 37 REPSAEPLPKLPRVIKEEPYFPENSEQASSSPPVPQILCASPNGPVIHGKSLVAGYRP 94
>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 77 protein.
Length = 1004
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 221 PDPPENNPHELSPPPRHDLLMNGPQLEDSDD 313
P PP P LSPPP + + P +S +
Sbjct: 31 PPPPHRKPASLSPPPDDENTIRPPSSSESSE 61
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 248 ELSPPPRHD--LLMNGPQLEDSDDENEYVGYEP 340
E+S PP +D L+ + + ED DDE+E Y P
Sbjct: 514 EISEPPTNDERLVFSSSEDEDDDDEDELRVYRP 546
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGT 355
D P PP P ELSPPPR P+ ++ ++ + PLPQ +
Sbjct: 143 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQAS 187
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGT 355
D P PP P ELSPPPR P+ ++ ++ + PLPQ +
Sbjct: 784 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQAS 828
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGT 355
D P PP P ELSPPPR P+ ++ ++ + PLPQ +
Sbjct: 784 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQAS 828
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 DGPDPPENNPH-ELSPPPRHDLLMNGPQLEDSDDENEYVGYEPLPQGT 355
D P PP P ELSPPPR P+ ++ ++ + PLPQ +
Sbjct: 784 DIPAPPRPPPPVELSPPPRPP---PPPEYDEEEETRAFWERYPLPQAS 828
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,902,048
Number of Sequences: 27780
Number of extensions: 393832
Number of successful extensions: 1211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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