Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_P08
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.033
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.24
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.41
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.72
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.95
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.8
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 26 8.8
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.9 bits (74), Expect = 0.033
Identities = 25/70 (35%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Frame = -1
Query: 895 GXXPPGPGW--GXGGXXRXG---------GXPPGGGXGXPDXXXXEGXXXGAXXGGXXGG 749
G PPGPG G GG G G PGG G P G GG GG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Query: 748 XGRXXEXPGG 719
G PGG
Sbjct: 258 PGGFGGGPGG 267
Score = 29.1 bits (62), Expect = 0.95
Identities = 24/86 (27%), Positives = 25/86 (29%)
Frame = -1
Query: 778 GAXXGGXXGGXGRXXEXPGGXRXXXXXSPXGFXPXQGGGALWGXXXKGGXPXGXXXXXXX 599
G GG GG G PGG G GG G G P G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG 246
Query: 598 LXXXXWXWGGPXXPGXTRGAXPGXGG 521
+GG PG G G GG
Sbjct: 247 FGGGLGGFGG--GPGGFGGGPGGHGG 270
Score = 28.7 bits (61), Expect = 1.3
Identities = 29/87 (33%), Positives = 29/87 (33%), Gaps = 2/87 (2%)
Frame = -1
Query: 874 GWGXGGXXRXGGXPPGGGXGXPDXXXXEGXXXGAXXGGXXGGXGRXXEXPGGXRXXXXXS 695
G G GG G PP G G G G GG G PGG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGE------GHHHGGHGGFGGGPGGFE----GG 236
Query: 694 PXGFXPXQG--GGALWGXXXKGGXPXG 620
P GF G GG L G GG P G
Sbjct: 237 PGGFGGGPGGFGGGLGGF---GGGPGG 260
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.24
Identities = 36/148 (24%), Positives = 38/148 (25%), Gaps = 8/148 (5%)
Frame = +3
Query: 456 GXPPASXXRDXGPPXPRXGXXVPPXP---GXAPRVXPGXXGPPQXQXXXXRXXXXXXXPX 626
G PP PP P+ VPP P G P P PP
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA 1149
Query: 627 GXXXXXXXXXXXXXXXXGXKPXGLXXXXXRXPPGXSXXRPXPPXXPPXXA-PXXXPSXWX 803
P + PP PP PP A P PS
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPP--VPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS--- 1204
Query: 804 XSGXPXPPPGGXP----PXRXXPPXPHP 875
P PPP P P PP P P
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 30.3 bits (65), Expect = 0.41
Identities = 26/105 (24%), Positives = 26/105 (24%)
Frame = +1
Query: 562 PGGHPRXXPXXXGAXXGPXTLEAXPP*XXFPKGXPPPXXGQNPXGSXXXXGGPPPXFXXX 741
P G P A P A P P P P PP
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 742 GXXPRXXPLGGXPXPXPPXGXGPGXPFPXREGXPXXXXXXLXPTP 876
G P P G P P PP P P P P P P
Sbjct: 1177 GIPPVPKPAAGVP-PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 29.9 bits (64), Expect = 0.54
Identities = 31/129 (24%), Positives = 33/129 (25%), Gaps = 1/129 (0%)
Frame = +1
Query: 493 PXPHGGGXXSPPXQGXPLGLXXXPGGHPRXXPXXXGAXXGPXTLEAXPP*XXFPKGXPP- 669
P P G P P P G P A P PP G PP
Sbjct: 1134 PVPSGAPPVPKPSVAAPP--VPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191
Query: 670 PXXGQNPXGSXXXXGGPPPXFXXXGXXPRXXPLGGXPXPXPPXGXGPGXPFPXREGXPXX 849
P + P G PP P P G P P P P P E
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVP-PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250
Query: 850 XXXXLXPTP 876
P+P
Sbjct: 1251 TPRSSVPSP 1259
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/58 (36%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Frame = +3
Query: 720 PPGXSXXRPXPPXXPPXXAPXXX-PSXWXXSGXPX-PPPGGXPPXR----XXPPXPHP 875
PP P PP AP PS SG P P P G PP PP P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/60 (28%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Frame = +3
Query: 720 PPGXSXXRPXPPXXPPXXAPXXXPSX-WXXSGXPXPPPGGXPPXRXXPPXPHPGPGGXXP 896
P + P P PP P P SG P PP P P P P P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP 1086
Score = 26.6 bits (56), Expect = 5.1
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Frame = +3
Query: 720 PPGXSXXRPXPPXXPPXXAPXXX-PSXWXXSGXPXPPPGGXPPXRXXP--PXPHPGPGGX 890
PP PP P AP PS + P P P G PP P P P G
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSV---AAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158
Query: 891 XP 896
P
Sbjct: 1159 PP 1160
Score = 26.6 bits (56), Expect = 5.1
Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Frame = +3
Query: 720 PPGXSXXRPXPPXXPPXXA-PXXXPSXWXXSGXPXPPPGGXPPXR----XXPPXPHPGPG 884
PP PP P A P PS + P P P G PP PP P P G
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPS---VAAPPVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Frame = +3
Query: 426 GPPXGXXXXXGXPPASXXRDXGPPXPRXGXXVP--PXPGXAPRVXPGXXGPP 575
G P PP PP P+ VP P P AP V G P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/51 (29%), Positives = 16/51 (31%)
Frame = +3
Query: 744 PXPPXXPPXXAPXXXPSXWXXSGXPXPPPGGXPPXRXXPPXPHPGPGGXXP 896
P P P P + P PPP PP PP P P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 720 PPGXSXXRPXPPXXPPXXAPXXXPSXWXXSGXPXPPPGGXPPXRXXPPXPHPG 878
PP S P PP P P + +G P PP P P P+PG
Sbjct: 1699 PPQMSAPTPPPP---PMSVPPPPSAPPMPAGPPSAPPPPLPASSA-PSVPNPG 1747
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 438 PPGGRRXXXPCPAXRPFPLGPXXPXPPP 355
PP P P+ P P GP PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.72
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 816 PXPPPGGXPPXRXXPPXPHPG 878
P PPP G P PP P PG
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPG 31
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.95
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Frame = +3
Query: 744 PXPPXX---PPXXAPXXXPSXWXXSGXPXPPPGGXPPXRXXPPXPHPGP 881
P PP P AP P G P PPP PP P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 28.7 bits (61), Expect = 1.3
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Frame = +3
Query: 750 PPXXPPXXAPXXXPSXWXXSGXPXPPPG---GXPPXRXXPPXPHPGPGGXXP 896
PP P P P+ P PPP G PP PP P PG G P
Sbjct: 733 PPPPPAVIVPTPAPAP-----IPVPPPAPIMGGPP----PPPPPPGVAGAGP 775
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Frame = -2
Query: 438 PPGGRRXXXPCPAXRPFPLGPXXP---XPPPP 352
PP P PA P P+ P P PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 744 PXPPXXPPXXAPXXXPSXWXXSGXPXPPPGGXPP 845
P PP P P P +G PPP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 722 PRXFXXPAXXPGPAPXXGXPXPTLPXGXVRAAXSP 826
P P P PAP G P P P V A P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Frame = +3
Query: 723 PGXSXXRPXPPXXPPXXAPXXXPSXWXXSGXPXPPP--GGXPPXRXXPPXP 869
P + P PP P P PS + P PPP G PP P
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Frame = +3
Query: 720 PPGXSXXRPXPPXXPPXXA--PXXXPSXWXXSGXPXPPPGGXPPXRXXPPXPHPG 878
P G S P PP P P S S P PPP P R P P G
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA--IPGRSAPALPPLG 407
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Frame = +2
Query: 572 TPGPXPXXKXPXXXLXPXRPAPLXGXSPKGXP-PLXGXKTXXAXXXTXAXPPRXFXXPAX 748
TP P P L P P L +P P P A PP PA
Sbjct: 419 TPPSLPPSAPPS--LPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476
Query: 749 XPGPAPXXGXPXPTL 793
P PAP P ++
Sbjct: 477 PPAPAPAPAAPVASI 491
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = +3
Query: 429 PPXGXXXXXGXPPASXXRDXGPPXPRXGXXVPPXPGXAPRVXPGXXGPP 575
PP PP PP P PP P AP P P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +3
Query: 765 PXXAPXXXPSXWXXSGXPXPPPGGXPPXRXXPPXPHPGPGGXXP 896
P AP +G P P G R P P G GG P
Sbjct: 300 PNRAPSTNNRYRGWNGSPTPAAGNNTNGRPVAPRPSAGAGGANP 343
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 824 GXGXPGPXPXGGXGXGXPPRG 762
G G P P G G G PP G
Sbjct: 123 GVGYTAPPPPAGFGRGAPPPG 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,515
Number of Sequences: 5004
Number of extensions: 27851
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -