Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P07
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    31   0.92 
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380...    29   4.9  
04_03_0643 + 18328807-18331969,18332560-18332627                       29   6.5  
04_03_0069 - 10665455-10666902,10669889-10670138                       28   8.5  

>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 257 LAEGCYKDISTEYFWMGKREVYAEMLAETFSVSIAYS---KSSGPNSNSRLI 403
           +A+ C  D+S   FW+    V  E++A+TF ++   S   K+   N N++++
Sbjct: 326 VAKSCGNDVSRLTFWLSNTVVLREIIAQTFGITRQPSLAMKAFSTNVNAKML 377


>12_02_0272 -
           16634765-16635004,16635412-16635457,16636107-16638098,
           16639478-16640286
          Length = 1028

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 277 FVTALSETTPTXPWARVAIHLFYQPLSQN 191
           F+ + SET PT  W R  ++L Y  LS N
Sbjct: 391 FMGSESETNPTLEWMRHVLNLSYLDLSHN 419


>04_03_0643 + 18328807-18331969,18332560-18332627
          Length = 1076

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 582 LSIFTCSTFTRLSVELVCTSDSKVVELLPGSKY-CIKVFSHSCTCFLKSEASRR 424
           LSIFT    +   +  +CT + K+  L+    Y  IK F+    C+ K   S R
Sbjct: 578 LSIFTKGNISCTEIVTICTQNKKLRSLICNESYRSIKQFAPVIDCWFKELPSIR 631


>04_03_0069 - 10665455-10666902,10669889-10670138
          Length = 565

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 257 DNTDKXVGPGRHSLVLSAIITKLSL 183
           D+ D+ V PGR+SLVL  ++  + L
Sbjct: 348 DHPDRVVHPGRYSLVLDPVVRNVKL 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,097
Number of Sequences: 37544
Number of extensions: 329599
Number of successful extensions: 955
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)