Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P04
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032642-3|CAA21654.1|  336|Caenorhabditis elegans Hypothetical ...    29   6.0  
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AL032642-3|CAA21654.1|  336|Caenorhabditis elegans Hypothetical
           protein Y48A6C.4 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 773 LDRHLIEQFECFVNYLGDDSLDPWEEP 693
           L R+  + F CF+NYLG      W +P
Sbjct: 179 LCRNHADLFPCFINYLGSSKRLAWNKP 205


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 701 EEPPPERFPASCCSRNRGLSSP 636
           +EPPP R P    SR RG S P
Sbjct: 309 DEPPPRRAPQEQPSRRRGASPP 330


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 701 EEPPPERFPASCCSRNRGLSSP 636
           +EPPP R P    SR RG S P
Sbjct: 417 DEPPPRRAPQEQPSRRRGASPP 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,848,491
Number of Sequences: 27780
Number of extensions: 378885
Number of successful extensions: 1141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)