Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_P03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    65   1e-11
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    64   2e-11
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    55   1e-08
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    29   1.2  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    28   2.1  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    27   4.8  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
 Frame = +2

Query: 218 VDLHHGEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKYAKGSSL-YPED 385
           V+    EQ  PE+L LNP   VPTL+D   +  +IWES AI+ YL +KY     +  P D
Sbjct: 34  VNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRD 93

Query: 386 PKARALVDQRLYFDI---GTLYQRFSDY-FYPQVFAGAPADKAKNEKVQEALQLLDKFLE 553
                 V Q L+F     G ++ +   +  Y Q    +   + +NE ++  L +L+  L+
Sbjct: 94  HPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQELVISAITRYRNE-IKRVLGVLEDILK 152

Query: 554 GQKYVAGPNLTVADLSLIASVSSLE 628
            + Y+     T+ADLS I+  + LE
Sbjct: 153 DRDYLVANRFTIADLSFISWNNFLE 177


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 10/139 (7%)
 Frame = +2

Query: 221 DLHHGEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKY--AKGSSLYPED 385
           D   GEQ   E+L LNP   VPTLVD   +  +IWES AI+ YL +KY   +  SL  +D
Sbjct: 35  DFQKGEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKYDTDRKISLSFDD 94

Query: 386 PKARALVDQRLYFDI---GTLYQR--FSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFL 550
           P+   L+ Q L+F     G ++ +  + ++F+ +    A   + +NE ++  L +L+  L
Sbjct: 95  PEYYKLI-QYLFFQASGQGVIWGQAGWFNFFHHEPVVSA-VTRYRNE-IKRVLGVLEDIL 151

Query: 551 EGQKYVAGPNLTVADLSLI 607
           + + Y+     T+ADLS I
Sbjct: 152 KDRDYLVANKYTIADLSFI 170


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 17/176 (9%)
 Frame = +2

Query: 248 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFD 427
           P Y KL+P    P +VDDG++  ES AI+ +LV KY  G S  P +     L    L+  
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY--GPSFKPSEEDVAELEKYELWMH 97

Query: 428 IG--------------TLYQRFSDYFYPQV---FAGAPADKAKNEKVQEALQLLDKFLEG 556
                            L    +  F+  +   F      K  +++    L  +D  L  
Sbjct: 98  FSEASLMPFIWASHVLDLSVNMTPIFFRYIVRQFVNGIKSKYLSKETFLNLDYIDNHLAS 157

Query: 557 QKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKSTAPGYRRPTRK 724
            +Y AG   T AD  +   + + +   +  K Y N+KRW   V S  P  R    K
Sbjct: 158 NEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVV-SDRPACRIAAEK 212


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/71 (30%), Positives = 32/71 (45%)
 Frame = +2

Query: 515 VQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVKRWYETVKST 694
           ++EAL+L    L   K + GPN  + D       S L+   I       +KR Y  + S 
Sbjct: 477 LEEALRLR---LAYAKKIKGPNFLIVD-------SMLDDFKIALSVAVRIKREYIKIASP 526

Query: 695 APGYRRPTRKD 727
           +PG+  PT  D
Sbjct: 527 SPGWSLPTNVD 537


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 34/118 (28%), Positives = 52/118 (44%)
 Frame = +2

Query: 299 DGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVF 478
           + LSI ESR  I  +  ++   S L+P D K  A  + RL F +G  + R +      + 
Sbjct: 263 NSLSI-ESRLTIANMTTEWGALSGLFPTDEKLLAWYEDRLKF-LGPNHPRVNRETLDAIK 320

Query: 479 AGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKK 652
           A +P     +E    A  L+         V+GPN     + +  S ++LE  DI  KK
Sbjct: 321 A-SPI--LADEGAFYAKHLILDLSTLSPAVSGPN----SVKVYNSAATLEKKDILIKK 371


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = +2

Query: 500 AKNEKVQEALQLLDKFLEGQ----KYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK 667
           A+  K+ +AL+   ++ E Q    KY   P L    LS  A+  S+  S        + +
Sbjct: 116 AEKRKILDALKSRKEYFETQALLEKYGEQPTLAQKKLSNAAAAKSVPGSSSSSSDPMHPQ 175

Query: 668 RWYETV 685
            WY+ V
Sbjct: 176 HWYDRV 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,518
Number of Sequences: 5004
Number of extensions: 57641
Number of successful extensions: 195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)