Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_O23
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 192 2e-49
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 192 4e-49
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 176 2e-44
01_06_0579 + 30379243-30379617 29 3.9
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 29 5.2
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 9.0
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 28 9.0
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 192 bits (469), Expect = 2e-49
Identities = 101/189 (53%), Positives = 130/189 (68%), Gaps = 9/189 (4%)
Frame = +1
Query: 193 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAXFNQIVLRRLFMSRINRPP 369
GID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPP 61
Query: 370 ISVSRLARHM--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARIL 531
+S+ RL R M K P R + IAV+VGTVT+D R+Y++P M VAAL TE ARARI+
Sbjct: 62 LSMRRLVRFMEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARII 121
Query: 532 AAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH-- 705
AGGE LTFDQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG
Sbjct: 122 NAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRKF 181
Query: 706 EKARPSRRA 732
EKAR R +
Sbjct: 182 EKARGRRNS 190
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 192 bits (467), Expect = 4e-49
Identities = 100/183 (54%), Positives = 126/183 (68%), Gaps = 3/183 (1%)
Frame = +1
Query: 193 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAXFNQIVLRRLFMSRINRPP 369
GID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPP 61
Query: 370 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 549
+S+ RLA+ M+ E IAV+VGTVT+D R+ +IPKM V AL TE ARARI+ AGGE
Sbjct: 62 LSLRRLAKFMEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGEC 120
Query: 550 LTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGH--EKARPS 723
LTFDQLALRAP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG EKAR
Sbjct: 121 LTFDQLALRAPLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGR 180
Query: 724 RRA 732
R +
Sbjct: 181 RNS 183
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 176 bits (429), Expect = 2e-44
Identities = 100/200 (50%), Positives = 127/200 (63%), Gaps = 20/200 (10%)
Frame = +1
Query: 193 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAXFNQIVLRRLFMSRINRPP 369
GID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPP 61
Query: 370 ISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEI 549
+S+ RL R M+ +E IAV+VGTVT+D R+Y++P M VAAL TE ARARI+ GGE
Sbjct: 62 LSLRRLVRFMEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGEC 119
Query: 550 LTFDQLALRAPTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSHT 678
LTFDQLALRAP G+ T VL++G +NAREAV+HFGPAPG P S+T
Sbjct: 120 LTFDQLALRAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNT 179
Query: 679 KPYVRTKGH--EKARPSRRA 732
KPYVR+KG EKAR R +
Sbjct: 180 KPYVRSKGRKFEKARGRRNS 199
>01_06_0579 + 30379243-30379617
Length = 124
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -3
Query: 469 CTVSRHL*LSPLPRQSNPHELASS 398
CT+S H SP+ R S+PH LASS
Sbjct: 11 CTISCH---SPMRRSSSPHRLASS 31
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 440 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 336
P TTA KP RV F + + K D E+ G L L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 537 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 439
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 708 FMSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 529
F+ +G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 528 NACTSFFG-NMKSSHRHLRY 472
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,775,630
Number of Sequences: 37544
Number of extensions: 444197
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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