Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_O22
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.5
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 27 3.6
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 27 4.7
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.7
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 6.2
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 8.2
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 8.2
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 26 8.2
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 8.2
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +1
Query: 292 LKWKKDIPXNAQNC---WIAALLYLITLVVSGHQFWLNNRSSVS 414
L W +P N+Q W+ AL+ I+++ G+ WLN +SS+S
Sbjct: 237 LSWGIPVPGNSQQTIYVWLDALINYISVI--GYP-WLNEKSSLS 277
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 241 IYHLMRKIRLILSKTSSLKWKKDIPXNAQNCWIAALLYLITLVVSG 378
++HL+ + S L W I N + W+A L+ L+ ++SG
Sbjct: 47 LFHLLEFYITARFQGSQLSWDSFILNNGKAYWLAMLVGLLECLLSG 92
>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 695 VAICWKNLDAKGRGLFIVADYGRGLHT 615
++ CW L AK LF+V D G + T
Sbjct: 48 ISKCWYQLPAKQEELFVVEDQGDKIET 74
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 191 DVDGRLLLYSSCRSAGGSTI**EKSASFYRRLRH*SGKR 307
D+D R LYS+ +GGST+ F LR SGK+
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKK 329
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 754 IESVIYFNLDDWNSKNKNII--CY 819
IES+ NLDDW+ + ++I+ CY
Sbjct: 58 IESIDDLNLDDWSEQQESILLMCY 81
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/53 (22%), Positives = 24/53 (45%)
Frame = -2
Query: 422 YYILTEERLFSQN*CPDTTSVIRYNNAAIQQFCAXQGISFFHFNDEVFDRMRR 264
Y + E+ F TTSV++++N + +C F F ++V + +
Sbjct: 41 YVAIGEDASFVAQNAYHTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLAK 93
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 721 CLNKWADDLWQYAGKIWMRKVEDC 650
C+ LW + +W KVEDC
Sbjct: 63 CIPPMKKSLWGWIEPLWSIKVEDC 86
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 685 HIATSHQPTYLNKFFNYFKVLFEIESVIYFNLDDWNS 795
HIA++ +K + L E V+ +DDWNS
Sbjct: 626 HIASADSAPGFDKLSSDLSSLLTDEPVVKTEMDDWNS 662
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 688 IATSHQPTYLNKFFNYFKVLFEIESVI 768
I + QP L K F Y+ + F I S I
Sbjct: 55 IMRNRQPIRLQKIFQYYNLTFSIASAI 81
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 392 SQN*CPDTTSVIRYNNAAIQQFCAXQGISFF 300
S+N P+T S++R+N Q A G+ F+
Sbjct: 326 SKNLLPETPSIVRFNPRFSQLVTAHSGVIFW 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,077
Number of Sequences: 5004
Number of extensions: 71701
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -