Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O22
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    29   3.8  
06_03_0556 - 22097423-22097445,22097579-22097613,22097873-220979...    28   8.7  

>04_03_0103 + 11288977-11290353,11291962-11292075,11294987-11295436,
            11295813-11295910,11296023-11296206,11296979-11297068,
            11301608-11301727,11301812-11302054,11302715-11302988,
            11303237-11303357,11303591-11303849
          Length = 1109

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 658  LPFASKFFQHIATSHQPTYLNKFFNYFKVLFEIESVIY--FNLDDWNSKNKNIIC 816
            LP   +  QH+      + L     YFKVL  +  ++Y  FN DD    ++ I C
Sbjct: 941  LPDWKQVHQHVPLDEYQSNLRAICAYFKVLLGLMLLLYGCFNSDDNKGVSQEIAC 995


>06_03_0556 -
           22097423-22097445,22097579-22097613,22097873-22097941,
           22113969-22114807
          Length = 321

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 289 SLKWKKDIPXNAQNCWIAALLYLITLVVSGHQFWLNNR 402
           SL W  D   + +  W+AAL Y+ T    G   WL  R
Sbjct: 283 SLMWIADASGDDEVLWLAALRYIRTYQCRGMAGWLLTR 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,927,813
Number of Sequences: 37544
Number of extensions: 407792
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)