Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O19
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    50   6e-07
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    29   0.66 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    29   0.88 
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.5  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = +3

Query: 507 EISHKAKLLAAQIQRKV-VKSDFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSP 683
           + S KAK L  ++++K  +K++ +     EL ++++   K +   HD+SRV+Q  +K   
Sbjct: 128 DTSLKAKSLWDKLRQKTSIKAEERKTIIAELFDLIRTNVKQLVFKHDMSRVVQTCVKFGS 187

Query: 684 EDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGTDSL 800
           +     I  EL    V + +S Y  +   +I KYGT  +
Sbjct: 188 KQQRETICAELAGSYVDLCKSPYGKYLAIKIFKYGTPKM 226


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 585 CKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELL 719
           CKE  ++  GQ + IAL   L R  ++L+   P   ++ ITK L+
Sbjct: 566 CKEA-SLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLV 609


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/74 (17%), Positives = 41/74 (55%)
 Frame = +3

Query: 567 DFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQS 746
           ++ +N    ++N L+G++  +A+  + S V+Q + ++  E    E  +E++  +  + + 
Sbjct: 497 EYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIFHLDGIARG 556

Query: 747 KYAHHSVKRILKYG 788
           ++ +  V+ +++ G
Sbjct: 557 QWGNWVVQHMVENG 570


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 151 SKKMQKGKRKSDEDGVSSPKKEK 219
           +K+    KRKSDE+ + S KK+K
Sbjct: 269 TKETASSKRKSDEESLPSQKKQK 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,196
Number of Sequences: 5004
Number of extensions: 41228
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)