Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_O19
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 36 0.033
04_01_0522 - 6865049-6865131,6865214-6865388,6865692-6865877,686... 33 0.30
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48... 33 0.40
01_07_0344 - 42869465-42869502,42869597-42869771,42869923-428701... 33 0.40
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449... 32 0.70
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 31 1.2
08_02_0955 + 22994266-22995630 31 1.6
11_03_0198 - 11527711-11528163 30 2.1
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 4.9
07_01_0463 + 3502708-3503535 28 8.6
>02_05_1240 + 35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 36.3 bits (80), Expect = 0.033
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 654 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGT 791
VIQ +L+H D + I K+L IV+M Q K+A + V++ L +G+
Sbjct: 865 VIQHVLQHGKPDERSAIIKQLAGQIVKMSQQKFASNVVEKCLSFGS 910
>04_01_0522 -
6865049-6865131,6865214-6865388,6865692-6865877,
6866489-6866599,6866678-6866890,6867446-6867553,
6867632-6867773,6867855-6868951,6871287-6871559
Length = 795
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 654 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYGT 791
V+Q +L+H + + I ++L +V + Q KYA + V++ L +GT
Sbjct: 646 VVQHVLEHGRPEERSSIIQKLSGQVVNLSQQKYASNVVEKCLSFGT 691
>05_01_0072 -
486211-486254,486350-486524,486658-486852,487489-487599,
487693-487905,488432-488539,488621-488762,489157-490418,
490460-490480,490842-491228
Length = 885
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 654 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 788
V+Q +L+H + I ++L+ IVQM Q K+A + +++ L +G
Sbjct: 746 VVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFG 790
>01_07_0344 -
42869465-42869502,42869597-42869771,42869923-42870117,
42870678-42870788,42870899-42871111,42871551-42871658,
42871732-42871873,42872150-42873449,42874032-42874085,
42874491-42874923
Length = 922
Score = 32.7 bits (71), Expect = 0.40
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 654 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 788
V+Q +L+H + I ++L+ IVQM Q K+A + +++ L +G
Sbjct: 785 VVQHVLEHGKPHERSAIIEKLIGQIVQMSQQKFASNVIEKCLAFG 829
>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
23745083-23745190,23745378-23745587,23745881-23746055,
23746197-23746264
Length = 1186
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +3
Query: 651 RVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 788
RVIQ +L++ I +E+++ + M + +YA++ V+ IL++G
Sbjct: 997 RVIQRILEYFDSSIQEIFLEEIIEEVYYMAKDQYANYVVQNILQHG 1042
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Frame = +3
Query: 543 IQRKVVKSDF--KINSCKELH-NMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKE 713
+Q+ V SD KI KEL+ N++K + A + V+Q ++H P I +
Sbjct: 927 LQKAVELSDLDQKIQIAKELNSNIMKCIHDPNA-----NHVVQKCIEHVPPRFIQFFVES 981
Query: 714 LLDIIVQMGQSKYAHHSVKRILKYGTDSL 800
+ +V++ Y ++RIL+Y S+
Sbjct: 982 MYGRVVELSVHPYGCRVIQRILEYFDSSI 1010
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/68 (25%), Positives = 37/68 (54%)
Frame = +3
Query: 588 KELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSV 767
+E++ M K QY + V+Q +L+H + + I K+ + +V M + K+A + +
Sbjct: 1020 EEVYYMAKDQYANY--------VVQNILQHGKALVRSAIIKKFIGRVVAMSKQKFASNVI 1071
Query: 768 KRILKYGT 791
++ L +G+
Sbjct: 1072 EKCLIFGS 1079
>01_06_1320 + 36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 654 VIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVKRILKYG 788
V+Q +L+H + I ++L I+QM Q K+A + V++ L +G
Sbjct: 911 VVQHVLEHGKPHERSVIIEKLAGQIIQMSQQKFASNVVEKCLTFG 955
>08_02_0955 + 22994266-22995630
Length = 454
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +3
Query: 591 ELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDIINEITKELLDIIVQMGQSKYAHHSVK 770
+LHNM++GQ A T LS ++ LKH I+ +TK D + + + K
Sbjct: 224 KLHNMIRGQLSVKASTTQLSDKVR-RLKHKYNLILTRVTKSGRDPDLPTEHDREVYELSK 282
Query: 771 RILKYGTDSLG 803
++ +GT S G
Sbjct: 283 KV--WGTKSGG 291
>11_03_0198 - 11527711-11528163
Length = 150
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +1
Query: 103 VTKYKQFFIPNINRSSSKKMQKGKRKSDEDGVSSPK 210
V KYK +P+ +SS K +GKR SDE S K
Sbjct: 74 VQKYKIKVVPDDPETSSSKEGEGKRASDESAQPSDK 109
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/99 (20%), Positives = 47/99 (47%)
Frame = +3
Query: 516 HKAKLLAAQIQRKVVKSDFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDII 695
+ KL A I +VV+ +++ +++L YK + + SP+D+
Sbjct: 17 YSTKLQAIPILHEVVRIAPNLSNS---YHLLGSIYKECGELDKAINFLMLAAYVSPKDVF 73
Query: 696 NEITKELLDIIVQMGQSKYAHHSVKRILKYGTDSLGMRF 812
+ K+L+D+ ++ + A H V + ++ + +G++F
Sbjct: 74 --LWKKLIDMALKKEDAALARHCVLKAMRADPEDVGLKF 110
>07_01_0463 + 3502708-3503535
Length = 275
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 109 KYKQFFIPNINRSSSKKMQKGKRKSDEDGVSSPKKEKTK 225
K K+ + + S K ++GK+K D D KKEK K
Sbjct: 103 KKKEKEMKEKKKDKSDKKEEGKKKKDGDEEEGKKKEKKK 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,547
Number of Sequences: 37544
Number of extensions: 207287
Number of successful extensions: 473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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