Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O19
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    55   6e-08
Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    29   4.4  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    29   4.4  

>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 32/93 (34%), Positives = 49/93 (52%)
 Frame = +3

Query: 513 SHKAKLLAAQIQRKVVKSDFKINSCKELHNMLKGQYKSIALTHDLSRVIQVLLKHSPEDI 692
           + K K L  +I+        K  +  EL+ ++KG    +   HD SRVI+ L+    E I
Sbjct: 247 AQKCKELWEKIRMGKTPKAEKDTAVHELYGLVKGHAAKLIYAHDTSRVIECLVATEREGI 306

Query: 693 INEITKELLDIIVQMGQSKYAHHSVKRILKYGT 791
           IN +  EL   IV+M ++ Y+   VK++LK GT
Sbjct: 307 INNLFNELTPEIVRMSKNVYSKFFVKKMLKNGT 339


>Z74033-5|CAF31473.1|  333|Caenorhabditis elegans Hypothetical
           protein F38B7.7 protein.
          Length = 333

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -3

Query: 610 FNILCNSLQEFIL---KSDFTTFLCICAANNLALCEISNTSAVILALRLTVLNC 458
           F I+CNS   +I    KS+ T+F  IC   +L+   I  T+ + L L  T++ C
Sbjct: 30  FGIVCNSSIVYIFFNEKSERTSFNLICVYRSLSNIYILATTFIGLFLPKTIIGC 83


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 154 KKMQKGKRKSDEDGVSSPKKEKTK 225
           KK +K KR  DED + + KKEK K
Sbjct: 804 KKSKKEKRDEDEDDLDTEKKEKKK 827


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 130 PNINRSSSKKMQKGKRKSD-EDGVSSPKKEKT 222
           P+ N S SKK  K KRKSD EDG+   KK  T
Sbjct: 160 PSNNTSKSKK--KKKRKSDEEDGLRKMKKSST 189


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 130 PNINRSSSKKMQKGKRKSD-EDGVSSPKKEKT 222
           P+ N S SKK  K KRKSD EDG+   KK  T
Sbjct: 193 PSNNTSKSKK--KKKRKSDEEDGLRKMKKSST 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,801,279
Number of Sequences: 27780
Number of extensions: 219384
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)