Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O18
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    85   1e-17
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    85   1e-17

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +2

Query: 206 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 346
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
 Frame = +3

Query: 345 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 497
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 109 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 195
           MVR +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +2

Query: 206 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 346
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
 Frame = +3

Query: 345 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 497
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 109 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 195
           MVR +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,332
Number of Sequences: 5004
Number of extensions: 40566
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)