Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O18
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823           90   2e-18
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...    90   2e-18
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           60   2e-09
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    38   0.011
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117...    30   2.3  

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 40/47 (85%), Positives = 42/47 (89%)
 Frame = +2

Query: 206 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 346
           VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33  VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79



 Score = 88.2 bits (209), Expect = 8e-18
 Identities = 39/52 (75%), Positives = 46/52 (88%), Gaps = 1/52 (1%)
 Frame = +3

Query: 345 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 497
           FDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 79  FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130



 Score = 51.6 bits (118), Expect = 9e-07
 Identities = 23/29 (79%), Positives = 29/29 (100%)
 Frame = +1

Query: 109 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 195
           MVR++VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRP 29


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 40/47 (85%), Positives = 42/47 (89%)
 Frame = +2

Query: 206 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 346
           VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33  VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79



 Score = 77.4 bits (182), Expect = 2e-14
 Identities = 36/48 (75%), Positives = 41/48 (85%), Gaps = 1/48 (2%)
 Frame = +3

Query: 345 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 485
           FDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 79  FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/29 (75%), Positives = 29/29 (100%)
 Frame = +1

Query: 109 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 195
           MVR++VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRP 29


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 23/50 (46%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +3

Query: 348 DVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 494
           D+   +IE++   +LP+RQ+GY+V+TT  G++DHEEA ++++GG++LG+F
Sbjct: 79  DIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128



 Score = 51.6 bits (118), Expect = 9e-07
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = +2

Query: 206 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 343
           V+V FL +M   GYI +FE++D HR GKI V L GR+  C  ++ R
Sbjct: 32  VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYR 77



 Score = 31.5 bits (68), Expect = 0.98
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = +1

Query: 124 VLSDALKSIHNAEKRGKRQVLIRP 195
           +L+DAL+++ NAE+RGK   L++P
Sbjct: 5   ILNDALRTMVNAERRGKATALLQP 28


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +2

Query: 266 VDDHRAGKIVVNLTGRLNKCGVISPR 343
           VDDH++G+I++   GRLNK GVIS R
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFR 937


>05_05_0103 -
           22408832-22410041,22410500-22410628,22411600-22411703,
           22411780-22411874,22412483-22412540,22412741-22412792,
           22415399-22415532
          Length = 593

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 112 PWLRFSSRFVANRIDKNGPKKSKILRNSLN 23
           PW +     + N + K+GPKK  ++  SLN
Sbjct: 109 PWTQEEDDVIINMVKKHGPKKWSVIARSLN 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,832,244
Number of Sequences: 37544
Number of extensions: 274865
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)