Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O18
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...    93   3e-19
AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical ...    29   6.2  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 45/60 (75%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
 Frame = +3

Query: 321 SVVSFHLXFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 497
           SV+S  L  ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 73  SVISPRL--NIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 43/46 (93%), Positives = 44/46 (95%)
 Frame = +2

Query: 206 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 343
           VIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK  VISPR
Sbjct: 33  VIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPR 78



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +1

Query: 109 MVRMNVLSDALKSIHNAEKRGKRQVLIRP 195
           MVRMNVL+DAL +I+NAEKRGKRQVLIRP
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRP 29


>AF039710-6|AAB96688.1|  392|Caenorhabditis elegans Hypothetical
           protein C46E10.3 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 351 HQXRGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 247
           H  +G+     + LP RF+T+L AL   T+ NS M
Sbjct: 318 HPSKGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,086
Number of Sequences: 27780
Number of extensions: 234483
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)