Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O17
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   6.4  
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   8.5  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    26   8.5  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 716 RHASRREKGGQV---SGKRQGRNRRAHEGASR 630
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 100

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 741 TYSVSYEKAPRFPKGERRTSIR*AAGSEQESARGSFQ 631
           TY VS+    RFP  +R TSI  A    +      F+
Sbjct: 30  TYIVSFHNFVRFPIKQRNTSIHHAPNKRKRKDEAPFR 66


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 824 PGNYRLEFXPGXTRLIATGSSHWL 895
           P NY LEF P    L+ T S++W+
Sbjct: 204 PKNY-LEFAPDLFHLLTTSSNNWM 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,581
Number of Sequences: 5004
Number of extensions: 64769
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)