Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O17
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    31   1.3  
11_02_0141 + 8744928-8746187                                           29   5.1  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.9  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    28   8.9  
06_03_0218 + 18219956-18220555                                         28   8.9  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.9  
03_04_0061 - 16949038-16950006                                         28   8.9  
01_04_0020 + 15142402-15143421                                         28   8.9  

>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +3

Query: 633 GSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSGVXRSLQAG 779
           G SL    +  LP + Y S   P  SV L HSS C +  S V   L+AG
Sbjct: 124 GDSLPSYYISGLPKS-YYSRLFPRQSVHLFHSSYCLHWRSQVPEGLEAG 171


>11_02_0141 + 8744928-8746187
          Length = 419

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 797 PFSPTAAPYPGNYRLEFXPGXTRLIATGSSH 889
           P +PT +P P      F P  TRL+A G  H
Sbjct: 37  PSTPTPSPPPPPTPTTFLPSPTRLVAIGDLH 67


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +1

Query: 520 CWRXSIGSAPLTSITKIDAXVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 678
           CWR  +        T  D      +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 707 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 612
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 728 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 627
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 602 RTIKIPGVSPWKLPRALSCSDPAAYRILVRLSPFGKRGA 718
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 770 PSWAVCTNPPFSPTAAPYPGNY 835
           PS AV  +PP  P  APY G Y
Sbjct: 234 PSNAVVAHPPVVPYGAPYGGGY 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,330,974
Number of Sequences: 37544
Number of extensions: 534603
Number of successful extensions: 1604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)