Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O16
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   8.4  

>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 402 CLSGRALVFYEYFREAGGQGVFVPGI 325
           C+ G  L+FY+Y   AG  G+ + GI
Sbjct: 358 CMVGYPLIFYQYGFNAGEVGLAILGI 383


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -1

Query: 497 HYTYQSESAEKXSQTIQYNVSRSTX*EDGQVIVSLEELLFSTNIFGKLVDKECSSQASD 321
           H TY+  + E+      Y  S+ T  E+G V+++ E    S  +    V +    +A++
Sbjct: 451 HNTYRQNNLEELKNQNDYLTSQITNLEEGMVMLNKENTKLSEALSNHRVTRSEMEEATE 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,936
Number of Sequences: 5004
Number of extensions: 44188
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)