Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O15
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    29   4.4  

>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +3

Query: 483  DAPEIPESEEIQTECKITSVLSDE----VYEKALKESPKAQPNVCNTINSSVTVLERTKS 650
            D P  PE++ + T  K+ S LS++    ++ K LK+  K    V   I+  V+  E    
Sbjct: 1086 DLPFCPENKLVGTTNKLISDLSNKTKYVIHYKNLKQVLK-NGMVLKKIHRVVSFRESNWL 1144

Query: 651  PKFRIDLNLNISGTAKNFLDKD 716
              + I+LN N+   AKN  +KD
Sbjct: 1145 APY-IELNTNLRKIAKNEFEKD 1165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,113,515
Number of Sequences: 27780
Number of extensions: 362418
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)