Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O15
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.6  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 570 LKESPKAQPNVCNTINSSVTVLE 638
           LK  P   PN C  I SSV+  E
Sbjct: 584 LKGIPDPXPNTCKVIASSVSAGE 606


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
 Frame = +3

Query: 489 PEIPESEEIQTECKITSVLSDEV-------YEKALKESP-----KAQPNVCNTINSSVTV 632
           P  P S   Q +  +  +L+D++       + + ++  P     K    +  T  S   +
Sbjct: 233 PNFPSSGHWQDQMSLPQMLADKIGKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAEL 292

Query: 633 LERTKSPKFRIDLNLNISGTAKNFLDKDTETIRCISE 743
           +  T   K     +L++SG A N    +    RC+ E
Sbjct: 293 ICVTTGTKCVSGEHLSVSGGALNDCHAEVVARRCLCE 329


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 358 YQKNVAKRCSTTNFWPKKSKSEYH 429
           Y++   + CSTT   P KS +  H
Sbjct: 581 YKRRPQRACSTTGGVPSKSPTLTH 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,773
Number of Sequences: 438
Number of extensions: 4315
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)