Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O13
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    64   2e-11
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    30   0.50 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.7  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    27   4.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   6.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   8.1  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 33/103 (32%), Positives = 60/103 (58%)
 Frame = +1

Query: 379 GMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYS 558
           G S+++G  +GG+ GL +G++ T       ++R   ++N V ++G   G +LG++A  Y+
Sbjct: 88  GTSYLSGLAIGGLWGLNEGMKKTKDITST-RLRLNGILNGVTRRGPFVGNSLGVLALVYN 146

Query: 559 CIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSMGLGAA 687
            I   + + R K    N+  A + TG +YKST GLR+M + ++
Sbjct: 147 GINSLIGYKRQKHGWENSVAAGALTGALYKSTRGLRAMAISSS 189


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 133 SHVSSYSLVNLVLQIKNETKMSIF--GDILNKNEQKNNQASANL 258
           S  +S S  ++V QIKN +K S+F  G +  KN    N+ ++N+
Sbjct: 202 SQAASLSDSDMVQQIKNGSKTSLFKKGFLFKKNNAMQNRTTSNI 245


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 467 PT*PARVVALSPLYNPAIPPKPEPVIKD 384
           P+  A   +L   YNP  PP P P ++D
Sbjct: 174 PSAAAPATSLPSDYNPPPPPPPPPAVED 201


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/80 (21%), Positives = 30/80 (37%)
 Frame = +1

Query: 373 IIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASF 552
           ++ +  M   G G ++ + KG+       +  K     VVN  +    +T   L + A+ 
Sbjct: 258 LVAVKVMRADGTGTVSDIIKGIEFAFKQSKKDKESIASVVNMSIGGDASTALDLAVNAAI 317

Query: 553 YSCIALGVTWLRDKEDTANT 612
              +   V    D ED   T
Sbjct: 318 AGGLFFAVAAGNDAEDACGT 337


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +1

Query: 406 LGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYS 558
           LG   GL++ L    +AG + K   T+ ++Y  +Q   +G ++    +FY+
Sbjct: 557 LGSPLGLFQMLNGKKIAGPIPKTNLTRSLSY-SEQSFDSGVSILSCQNFYN 606


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 549 VLLMHSPWGNLASRQRRHSKHFHSSLN 629
           +L +H PW   A+ ++   +H+ SS N
Sbjct: 500 LLYLHRPWFVRAATRKEEREHYKSSFN 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,303,544
Number of Sequences: 5004
Number of extensions: 64460
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)