Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_O13
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0102 - 826827-827411 67 2e-11
10_08_0647 - 19576672-19577259 63 3e-10
04_04_0826 - 28453018-28453284,28453286-28453594 49 6e-06
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 35 0.099
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 33 0.30
04_01_0477 - 6221990-6223224,6227722-6228817 31 1.6
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 30 2.1
01_06_0933 - 33161687-33162205,33162290-33162376,33162459-331626... 28 8.6
>03_01_0102 - 826827-827411
Length = 194
Score = 67.3 bits (157), Expect = 2e-11
Identities = 38/134 (28%), Positives = 66/134 (49%)
Frame = +1
Query: 304 PEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRT 483
PEFL+ ++S + N+ G+ +++G+ G GL R G K+R
Sbjct: 46 PEFLFQEESLAQRRSWGENLTY-YTGIGYLSGAVAGAAVGLRDAARNAE-PGDTAKIRAN 103
Query: 484 QVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGL 663
+V+N G G TLG+I Y+ I G+ +RD++D N+ A TG ++++ +G
Sbjct: 104 RVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTAGLGTGALFRAANGP 163
Query: 664 RSMGLGAATGSYIS 705
RS + A G ++
Sbjct: 164 RSAAVAGAIGGVLA 177
>10_08_0647 - 19576672-19577259
Length = 195
Score = 62.9 bits (146), Expect = 3e-10
Identities = 42/167 (25%), Positives = 75/167 (44%)
Frame = +1
Query: 205 GDILNKNEQKNNQASANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGM 384
GD +K N +PY ++ Y PEFL+ ++S + N+ G+
Sbjct: 15 GDASGPGRRKYNPYHDLSTPY-SYQTLYDLPTSPEFLFQEESAAQRRSWGENLTY-YTGV 72
Query: 385 SFMTGSGLGGMAGLYKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCI 564
+++G+ G GL + A G K+R +V+N G G LG+I Y+ +
Sbjct: 73 GYLSGAVAGAALGL-RDAAAGAEPGDTAKIRANRVLNSCGGGGRRLGNRLGVIGLMYAGM 131
Query: 565 ALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSMGLGAATGSYIS 705
+ RD++D N+ A TG ++++ +G RS + A G ++
Sbjct: 132 ESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSAAVAGAIGGVLA 178
>04_04_0826 - 28453018-28453284,28453286-28453594
Length = 191
Score = 48.8 bits (111), Expect = 6e-06
Identities = 36/146 (24%), Positives = 64/146 (43%)
Frame = +1
Query: 268 LNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLYKGLRAT 447
++F Y PEFL+ +++ + ++ G ++ G G AGL +
Sbjct: 29 ISFRELYDLPTSPEFLFHEEALRSRRTCGEDLTF-YTGCGYLVGRAAGAAAGLKRAAEEA 87
Query: 448 TLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAAS 627
G+ K+R G G LG++A + I V LRD + ANT A
Sbjct: 88 E-RGESMKLRGQPRPQPCGSLGRAYGNRLGVVALLFVGIESTVGGLRDADGWANTVAAGI 146
Query: 628 TTGIIYKSTSGLRSMGLGAATGSYIS 705
TG +Y++ +G R+ +G++ G ++
Sbjct: 147 GTGALYRAAAGPRAAIVGSSVGGLMA 172
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 34.7 bits (76), Expect = 0.099
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 3/170 (1%)
Frame = +1
Query: 202 FGDILNKNEQ-KNNQASANLSPYL-NFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPI 375
FG + K E+ K S S L +FD P E+ M + L
Sbjct: 184 FGSLFGKKEEEKKASPSGGKSEMLESFDTPSTPIPTFEYNKKARPSMERDPCPDRI-LDD 242
Query: 376 IGMSFMTGSGLGGMAGLYKGLRATTLAGQ-VGKVRRTQVVNYVMKQGTTTGCTLGIIASF 552
IG SF G+ G KGLR + + G + ++ + G C L F
Sbjct: 243 IGASFGMGAVGGSFFHFVKGLRNSPSGARFAGGMEGVRMNAPRVAGGFAVWCGL-----F 297
Query: 553 YSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSMGLGAATGSYI 702
+C V+ +R KED N+ IA + TG I + GLR++ + G+ +
Sbjct: 298 SACDCALVS-VRQKEDPYNSIIAGAATGGILAARQGLRAVARASLQGAVL 346
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 33.1 bits (72), Expect = 0.30
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = -2
Query: 690 GSCTKTH*TKTRCAFVNDTSG*GCYESVCCVFFVSKPSYPKGYA*VKRCNNSKCAACSRT 511
G+C H ++CA N TSG Y C ++ P P G V C N+ T
Sbjct: 332 GACHSNH---SKCA--NVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNSICGAGST 386
Query: 510 LLHNIINYLCPSHF 469
+ +Y C +F
Sbjct: 387 CKNTEGSYRCDCNF 400
>04_01_0477 - 6221990-6223224,6227722-6228817
Length = 776
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 579 LASRQRR-HSKHFHSSLNHWYHLQKHIWSSFNGSWCSYRXL 698
LA RR H SL HWYH KH+ F+ + S+R +
Sbjct: 212 LAGHSRRCRPAQLHGSLLHWYHSIKHMILVFDTTAESFRWM 252
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +1
Query: 250 ANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGLY 429
AN S Y + +PR F +PD S + RS V +P I +F G GG +
Sbjct: 174 ANGSRYDGVWENGVPRGTGVFTWPDGSRYVGSWPRSCVDMPAISGTFFPPVGAGGGGAVR 233
Query: 430 K 432
K
Sbjct: 234 K 234
>01_06_0933 -
33161687-33162205,33162290-33162376,33162459-33162695,
33162778-33162886,33162997-33163313,33163398-33163607,
33165380-33165901
Length = 666
Score = 28.3 bits (60), Expect = 8.6
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = +1
Query: 499 VMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTANTFIAASTTGIIYKSTSGLRSMGL 678
V++ G T+ CTLG +S L ++W + A+S+T + +ST + GL
Sbjct: 518 VLRTGATSCCTLG--PGNFSGDEL-LSWCM-RRPFLERLPASSSTLVTMESTE---AFGL 570
Query: 679 GAATGSYISRDYILLTDNDNIWSKAKY 759
AA Y+++ + ND + A+Y
Sbjct: 571 EAADVKYVTQHFRYTFTNDRVRRSARY 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,012,912
Number of Sequences: 37544
Number of extensions: 399291
Number of successful extensions: 1199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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