Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O13
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical pr...    75   9e-14
Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical p...    30   2.5  
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    29   3.3  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z81063-5|CAB02956.1|  242|Caenorhabditis elegans Hypothetical
           protein F15D3.7 protein.
          Length = 242

 Score = 74.5 bits (175), Expect = 9e-14
 Identities = 49/158 (31%), Positives = 74/158 (46%)
 Frame = +1

Query: 247 SANLSPYLNFDPHYIPRMQPEFLYPDDSHMASTARRSNVALPIIGMSFMTGSGLGGMAGL 426
           S  ++PY+  DP      QP+++ P+     +   +   AL  IG +     G+G   G 
Sbjct: 72  SRQMTPYVQMDPSMFASQQPQYIMPEGG--VAGKGKFEFALGHIGWAVGGAFGVGCARGA 129

Query: 427 YKGLRATTLAGQVGKVRRTQVVNYVMKQGTTTGCTLGIIASFYSCIALGVTWLRDKEDTA 606
              L        VGK   T++VN  MK G+      G I   YS + +G+  +R  ED  
Sbjct: 130 LGELMNPETRKMVGKPWMTRMVNATMKHGSGFAQPSGAIVFMYSALEIGLRSVR-AEDEL 188

Query: 607 NTFIAASTTGIIYKSTSGLRSMGLGAATGSYISRDYIL 720
           N F A + TG IY+S  GL++ G+GA  G  I+  + L
Sbjct: 189 NGFGAGALTGAIYRSPHGLKASGVGALVGLGIAAAWTL 226


>Z70756-12|CAA94796.2|  180|Caenorhabditis elegans Hypothetical
           protein T06E4.10 protein.
          Length = 180

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -3

Query: 458 PARVVALSPLYNPAIPPKP--EPVIKDIPMMGRATFDLLAVEA 336
           PA VVA +P + PA  P P   P+I   P +  A+ + L V A
Sbjct: 98  PAPVVAAAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA 140


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 585 SRQRRHSKHFHSSLNHWYHLQKHI 656
           SR     + FHSS+ + YHLQ HI
Sbjct: 138 SRSPSPKRDFHSSMRNQYHLQAHI 161


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 490 VNYVMKQGTTTGCTLGIIASFYSCIALGVTWL 585
           +NY+  QG+TTG T+ +I  FY    L + WL
Sbjct: 267 INYMQFQGSTTGSTVSLI--FYPWDVLKLYWL 296


>AF025472-2|AAB71074.2|  625|Caenorhabditis elegans Hypothetical
           protein ZK250.5a protein.
          Length = 625

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 613 FIAASTTGIIYKSTSGLRSMGLGAATGSYISRDYILLTDNDNIWSKAKYNR 765
           + A     I  +  +   S+ L  + G++ +  Y +L+ ND +  K KYN+
Sbjct: 13  YSAIRKLSIFVRFETRFHSVNLDLSFGNHSNSIYYMLSKNDTLIDKTKYNK 63


>AF025472-1|AAY43980.1|  832|Caenorhabditis elegans Hypothetical
           protein ZK250.5b protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 613 FIAASTTGIIYKSTSGLRSMGLGAATGSYISRDYILLTDNDNIWSKAKYNR 765
           + A     I  +  +   S+ L  + G++ +  Y +L+ ND +  K KYN+
Sbjct: 220 YSAIRKLSIFVRFETRFHSVNLDLSFGNHSNSIYYMLSKNDTLIDKTKYNK 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,203,778
Number of Sequences: 27780
Number of extensions: 362609
Number of successful extensions: 1112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)