Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O10
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.9  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/67 (23%), Positives = 21/67 (31%)
 Frame = +2

Query: 713 PXXXPPNXPPLPXXPGPPXRPXXPSXXXPSQYPHTXXVSPPXGEXXXPXQNXXXRXXKPP 892
           P   PP+   +   P  P RP  P    P+    +    PP             +   PP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 893 PHXPRXR 913
           P  P  R
Sbjct: 314 PPPPSRR 320



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +2

Query: 689 PPQXXXHXPXXXPPNXPPLPXXPGPPXRPXXPSXXXPSQYPHTXXVSPP 835
           PP      P   PP+ PP      P   P  PS       P     +PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/60 (26%), Positives = 20/60 (33%)
 Frame = +2

Query: 623  HHXTXPPSXVXXXXXXXXXXXXPPQXXXHXPXXXPPNXPPLPXXPGPPXRPXXPSXXXPS 802
            H  + PP               PP      P   PP+ PP+P  P     P  P+   PS
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPASSAPS 1742


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = +2

Query: 689 PPQXXXHXPXXXPPNXPPLPXXPGPPXRPXXPSXXXPSQYPHTXXVSPP 835
           PP      P   P   PP+P    PP +P  P    PS  P      PP
Sbjct: 150 PPPSPASAPPI-PSKAPPIPSSLPPPAQPAAPVKSPPSA-PSLPSAVPP 196


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
 Frame = +2

Query: 689 PPQXXXHXPXXXPPNXPPLPXXPGP----PXRPXXPSXXXPSQYPH 814
           PP      P    P  PPLP  P P    P  P  P+   P    H
Sbjct: 107 PPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPPLPNEPVPETNCH 152


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 713 PXXXPPNXPPLPXXPGPPXRPXXPSXXXPSQYP 811
           P   P    PLP  P PP     P     SQ P
Sbjct: 225 PTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLP 257


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +2

Query: 689 PPQXXXHXPXXXP-PNXPPLPXXPGPPXRPXXP 784
           PP      P   P P  PP P   GPP  P  P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.138    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,364,508
Number of Sequences: 5004
Number of extensions: 12872
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)