Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O07
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    29   1.2  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    27   2.8  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   6.5  
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    26   8.6  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 285 APKPNTKYKPVNATKPKKMYNLFTPTFCSASS 190
           A K  +KYKP+N  KP  + +   PT  S S+
Sbjct: 510 ATKSASKYKPINYPKPDNVLSFDIPTSVSRSA 541


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 131 YKDNIEQSLNDKSKPWTKYFEL--AEQKVGVNRLYIFLGLVAFTGLYLVFGFGAEL 292
           ++  ++Q++ D       + +L   E+  GV++LY+FL       L+L   +G  L
Sbjct: 3   FQVRVKQNMQDLDNRLAAFPQLNSLEKNFGVSKLYVFLTAAGIYALFLFLNWGGFL 58


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 152 SLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVF 274
           +++ K+K  TKY      ++  N ++I+LG+  FT + LV+
Sbjct: 307 NMSYKAKLSTKYVFRVLAQLSENFIFIYLGMSLFTQVDLVY 347


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 86  G*PLKDRTMASKLQEYKDNIEQSLNDKSKPW 178
           G P   +   + L EYK   E+S+ND S  W
Sbjct: 20  GDPTVPKPNIASLDEYKRMYEESINDPSTFW 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,920
Number of Sequences: 5004
Number of extensions: 23818
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)