Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O05
         (934 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    43   7e-05
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 29/77 (37%), Positives = 30/77 (38%)
 Frame = -2

Query: 924 GGTXPAXAXGXGXPPPXXGGXGGXGXPGKXEGXEXEXGNGGRVXXGEXPGXFXXRXGGRP 745
           GG       G G PPP  GG GG G  G  EG      +GG    G  PG F    GG  
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFG-GEGHH----HGGHGGFGGGPGGFEGGPGGFG 241

Query: 744 PXKWGSGFGTXXXGXGP 694
               G G G    G GP
Sbjct: 242 GGPGGFGGGLGGFGGGP 258


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 727 GFWNLXXXXGAXGKXQGXGPFWGTALWG 644
           G W L     + GK +G    W  ALWG
Sbjct: 557 GVWKLLVNDRSGGKHEGTFENWQLALWG 584


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,247
Number of Sequences: 5004
Number of extensions: 23597
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)