Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O04
         (896 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ...    31   7.5  
X06268-1|CAA29604.1|  313|Homo sapiens pro-alpha 1 (II) collagen...    31   7.5  
M63281-1|AAA52038.1|  207|Homo sapiens type II collagen protein.       31   7.5  
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ...    31   7.5  
J00116-1|AAA51997.1|  456|Homo sapiens COL2A1 protein.                 31   7.5  
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph...    31   7.5  

>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
            alpha-1 type II collagen. ).
          Length = 1418

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 861  PPXXXGKTXITXPXGXGXNRLPPSPXXPXAXGVQXAGEXEKXPXSXPPFP 712
            PP   G++  T P G   N  PP P  P   G+  +      P    P P
Sbjct: 1117 PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1166


>X06268-1|CAA29604.1|  313|Homo sapiens pro-alpha 1 (II) collagen
           (313 AA; AA 975-271c) protein.
          Length = 313

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 861 PPXXXGKTXITXPXGXGXNRLPPSPXXPXAXGVQXAGEXEKXPXSXPPFP 712
           PP   G++  T P G   N  PP P  P   G+  +      P    P P
Sbjct: 12  PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 61


>M63281-1|AAA52038.1|  207|Homo sapiens type II collagen protein.
          Length = 207

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 861 PPXXXGKTXITXPXGXGXNRLPPSPXXPXAXGVQXAGEXEKXPXSXPPFP 712
           PP   G++  T P G   N  PP P  P   G+  +      P    P P
Sbjct: 105 PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 154


>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
            protein.
          Length = 1487

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 861  PPXXXGKTXITXPXGXGXNRLPPSPXXPXAXGVQXAGEXEKXPXSXPPFP 712
            PP   G++  T P G   N  PP P  P   G+  +      P    P P
Sbjct: 1186 PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1235


>J00116-1|AAA51997.1|  456|Homo sapiens COL2A1 protein.
          Length = 456

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 861 PPXXXGKTXITXPXGXGXNRLPPSPXXPXAXGVQXAGEXEKXPXSXPPFP 712
           PP   G++  T P G   N  PP P  P   G+  +      P    P P
Sbjct: 155 PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 204


>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
            (primary osteoarthritis, spondyloepiphyseal dysplasi
            protein.
          Length = 1487

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 15/50 (30%), Positives = 19/50 (38%)
 Frame = -3

Query: 861  PPXXXGKTXITXPXGXGXNRLPPSPXXPXAXGVQXAGEXEKXPXSXPPFP 712
            PP   G++  T P G   N  PP P  P   G+  +      P    P P
Sbjct: 1186 PPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDP 1235


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,347,281
Number of Sequences: 237096
Number of extensions: 1564257
Number of successful extensions: 1453
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)