Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O03
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0715 - 5542648-5543219,5543352-5543544                           29   3.9  
07_01_0080 + 587674-588510                                             29   5.2  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    29   6.9  

>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
 Frame = +3

Query: 669 PPXPFPPPNXXRXPRXSXXGGXXFRXPQRGXN--TXSPQNPGGYP 797
           PP P PPP        S  GG  F  P  G N     P  P   P
Sbjct: 188 PPPPPPPPAGGNFTAPSPAGGMNFTAPAPGTNGTAAPPPRPSSAP 232


>07_01_0080 + 587674-588510
          Length = 278

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 632 PXPRGKXGXLXXAPXPXPPPXXXPXPPXF 718
           P P    G     P P PPP   P PP F
Sbjct: 95  PPPPPSSGSPPPPPPPPPPPPPPPPPPLF 123


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 616 PXXXPPXPPGKXRFXFXXPXXXSPPXXPPXXPXXP 720
           P   PP PP   RF    P    PP  PP  P  P
Sbjct: 328 PPAPPPPPPPPSRFNNTTP-KPPPPPPPPEPPTGP 361


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,101,886
Number of Sequences: 37544
Number of extensions: 132446
Number of successful extensions: 1174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)