Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O02
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    28   1.5  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    28   1.5  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    28   2.0  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    28   2.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   3.6  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   6.2  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.2  

>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 251 AEVVLTKQLKDETIRVTFNVNHTVDSDDFEGDVQTEKQEFSEMRSKPQFE 400
           A VVL  +  DE IR+T NV+  V       D   E+Q+F+E   + + +
Sbjct: 96  AVVVLKAKHGDENIRITMNVSQDVT------DAVPEEQDFTEFEDEQELQ 139


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
 Frame = +2

Query: 203 SLSLSEVEGFTVKGDGAEVVLTKQLKDETIRVTFNVNHTV------DSDDFEGDVQTEKQ 364
           +L L  V  F   G G   +L + LKD   ++ F+V+HT       + D  +    T K+
Sbjct: 15  TLKLKPVVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVT-KE 73

Query: 365 EFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDV 493
           EF ++ ++ +F    V      G +   +Q+  A +     D+
Sbjct: 74  EFQKLVAEEKFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDI 116


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 663 YEHTAYINLLESISKFTIGK*CNFKLKFK*HTNINFFLNTLFQII 797
           Y+H  + ++LE  S   I   CN   KF   +N +FFL   F ++
Sbjct: 23  YQHRNFESILEIFSVLFIPFLCNSGKKFLQISNASFFLPACFYLL 67


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = -3

Query: 270 FVKTTSAPSPFTVKPSTSDRERLDLLCFAF---SNY-FFCQELYQFSFTFRVKRLQ 115
           +++ TSAP P TV+P    ++ L+LL   +    NY + C +         V+R+Q
Sbjct: 143 YLRLTSAPDPDTVRPLPVLKQTLELLKKKWKEEKNYAYICDQFKSLRQDLTVQRIQ 198


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +1

Query: 613 GHKQ*IRAEAVRLQXPPTSTRRTSIFWSPYLNSPSENNVTSN*NLNSIQTLIFF*IPCF 789
           G  Q I+ +A+ L    T     S + S  LN  S+ N+ S+  L  I    FF   CF
Sbjct: 277 GRDQYIQCQALYLIIRLTCLYLLSCYESEILNLSSDTNLESDFLLRQIHAAFFFVTICF 335


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +2

Query: 323 DSDDFEGDVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQDPPAASADEYNDVFGI 502
           D +D + +++ EK+E  E + KP    ++   D T G     L+D  +   DE +D +  
Sbjct: 268 DDEDEDEELEGEKEEEEEEKEKP----EISNYDETEGKVNFSLEDSESLEFDEGSDDYDY 323

Query: 503 DEIT 514
            ++T
Sbjct: 324 AKLT 327


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 305 NVNHTVD-SDDFEG-DVQTEKQEFSEMRSKPQFEVDLVRGDTTLGFTCSYLQD 457
           N  H+V  S DF   +V++E  + +E  S  +FE    +  T LGF+ S LQD
Sbjct: 5   NTLHSVSISTDFPSPNVESEAADVNEYSSTSKFETLGNQSSTNLGFSNS-LQD 56


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 470 SADEYNDVFGIDEITLYK 523
           S  +Y DV+G+DE+ L++
Sbjct: 312 SISDYTDVYGVDELQLFE 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,314
Number of Sequences: 5004
Number of extensions: 61679
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)