Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_O02
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.92 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   8.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   8.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 252 APSPFTVKPSTSDRERLDLLCFAFSNYFFCQELYQ 148
           +P+     P     E +D LC    ++  C E+Y+
Sbjct: 447 SPATTAAPPQLPTEESVDALCNTLHHWHHCPEIYK 481


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 444 PIFKIHLQLLLMNITMCSALTK*PYIRVNGMTKCMQ 551
           P   +H QLL      C+A     + R+ G   C+Q
Sbjct: 299 PPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQ 334


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 209 SLSEVEGFTVKGDGAEVV-LTKQLKDETIRVTFNVNHTVDSDDFEGD 346
           +L  + G  +K +    V   K +KDE + V  N    + +DDF  D
Sbjct: 348 TLQMIAGMKIKEELPHFVGSNKPVKDEYMLVLSNRMQKIVNDDFNFD 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,546
Number of Sequences: 438
Number of extensions: 4190
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)