Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_N24
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 30 0.52
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 29 1.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.1
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer... 28 2.1
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 2.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 2.7
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 3.6
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 27 3.6
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 4.8
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 26 6.3
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 6.3
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 8.4
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 29.9 bits (64), Expect = 0.52
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +2
Query: 167 SNINREVNMTKPIIDDN-ASNVLKGSNNESDSKAESRDELKPRSPXXIEDGLSRIETIDF 343
SN+N+ ++ K I+DN AS+ + +++SDS + S ++ L R++ +
Sbjct: 134 SNLNKPNDLLKAEIEDNEASHYSQNQSSDSDSDEAPEEVSLKSSSDEVKKRLQRLKGNEL 193
Query: 344 GSTAGVV 364
STA V
Sbjct: 194 HSTAHFV 200
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 28.7 bits (61), Expect = 1.2
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +2
Query: 359 VVKEYNGEAVVENPTDRLTEDINGKENELEPKSNHDFFEGPSIFPIIDCPENCTELDF-- 532
++K N E N T L ++G N L + +E P+ P C N LD
Sbjct: 218 LLKGLNNELKKSNGT--LLTCLSGTLNSLVEMLS-PLYERPNSNPFEVCELNAILLDAKI 274
Query: 533 -NEFIFNEDIQSKYKDEYYDDANDFFLDASRFKRSVNIIEEENRAV 667
N+ +F ++ + K D+ + + + K +NI+++EN+ V
Sbjct: 275 QNQLLFIRNLLHERKYVSIDELDAILEENEKNKHLINILQKENKRV 320
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +2
Query: 329 ETIDFGSTAGVVKEYNGEAVVEN--PTDRLTEDINGKEN-ELEPKSNHDFFEGPSIFPII 499
ET++ S AG KE+N ++VV N P + ++ + E +P SN + +
Sbjct: 252 ETVNLTSEAGNEKEFNNDSVVLNTTPKEMQISSLDAVDKLEDKPVSNDNIKANIESSTTV 311
Query: 500 DCPENCTELDFNE---FIFNEDIQSKYK 574
D + E + NE F+ N++ +++
Sbjct: 312 DRASSQLESENNESTFFVHNQNSSGQHQ 339
>SPAC56F8.04c
|coq2|ppt1|para-hydroxybenzoate--
polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 358
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 510 SGQSMIGKIEGPSKKSWLDLGSNSFSFPLISSVKRSVGFSTTASPLYSLTTPAVL 346
S S+ + PSKKSW DL S + + + + R+ G T LYS T ++L
Sbjct: 39 SSNSVTPNLISPSKKSWKDLFSKRWQY--YAEISRA-GSPTGTYLLYSPCTWSIL 90
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 341 FGSTAGVVKEYNGEAVVENPTDRLTED-INGKENELEPKSNHDFFEGPSI 487
F S+ V++ AVV++PT+ L+E +++ ++ + DF G +I
Sbjct: 482 FSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYTEDFATGFAI 531
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/65 (30%), Positives = 25/65 (38%)
Frame = -2
Query: 510 SGQSMIGKIEGPSKKSWLDLGSNSFSFPLISSVKRSVGFSTTASPLYSLTTPAVLPKSMV 331
S S SKK + SF L SS K + S+T +PL T P S +
Sbjct: 373 SASSTTKSSNSKSKKKVTSISGTSFFKNLASSTKPTSASSSTKAPLTKQQTNPSTPLSSI 432
Query: 330 SIRLK 316
LK
Sbjct: 433 MAGLK 437
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 158 QTQSNINREVNMTKPIIDDNASNVLKGSNNESDSKAESR 274
+T+ + N E+N+ + + + SNV K + +E D+K R
Sbjct: 37 KTKLSTNFEINLPRRTVLSDVSNVGKNNADEKDTKKAKR 75
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 497 IDCPENCTELDFNEFIFNEDIQSKYKDE 580
I CPE +L +++++F+ DI S K++
Sbjct: 89 ITCPELSYDLGYSDYVFDIDIYSASKEK 116
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/121 (19%), Positives = 47/121 (38%)
Frame = +2
Query: 140 VIDRGLQTQSNINREVNMTKPIIDDNASNVLKGSNNESDSKAESRDELKPRSPXXIEDGL 319
++ +GL N+ K +DD ++ + E DS +DE S + D
Sbjct: 45 IVTKGLDNWQIYNQLALAAKYALDDLPQVDVENEDEEEDSITSFQDEDDETSHQELSDN- 103
Query: 320 SRIETIDFGSTAGVVKEYNGEAVVENPTDRLTEDINGKENELEPKSNHDFFEGPSIFPII 499
S + D + ++G +E+ + ED++G E E+ + + F +
Sbjct: 104 SEMNNRDDADDEFL--GFSGPENLEDVDESSAEDVSGDEAEIMNEEGQQIEQKKDAFGLN 161
Query: 500 D 502
D
Sbjct: 162 D 162
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 458 NHDFFEGPSIFPIIDCPENCTELDFNEFIFNEDIQSKYKDEYYDDAN 598
N DF + P + P D E E D E F+E+ + ++E DD +
Sbjct: 161 NPDFDDAPPVQPDADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGD 207
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 350 TAGVVKEYNGEAVVENPTDRLTEDINGKENELEPKSN 460
T GV E NGE++V+ +ED N E +P S+
Sbjct: 622 TEGVDSEVNGESLVQVNKVLKSEDDNTSEASKDPSSH 658
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 371 YNGEAVVENPTDRLTEDINGKENELEPKSNHDFFEGPSIFPIIDCPENCTELDFNEFIFN 550
+ G V+E+P ++D+ + L K G S+F + ++C LD FI+
Sbjct: 680 FQGLFVLESPLRESSKDVIS--SLLRSKMEVSICSGDSLFTSVFVAKHCGALDSCNFIYT 737
Query: 551 EDIQSKYKD 577
++ D
Sbjct: 738 AELADSGDD 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,901
Number of Sequences: 5004
Number of extensions: 57195
Number of successful extensions: 219
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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