Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP16_F_N24
(901 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542... 31 0.94
05_03_0628 - 16367841-16369259 30 2.2
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 29 3.8
07_03_1130 - 24187316-24187402,24188365-24188436,24188714-24189379 29 3.8
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903... 29 5.0
10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033 29 5.0
12_02_1021 + 25364349-25364465,25367237-25367324,25367851-253680... 29 6.7
04_03_1001 - 21609280-21610131 28 8.8
>02_02_0520 +
11152718-11153600,11153736-11153917,11154160-11154249,
11154343-11154627,11154776-11154994,11155112-11155339
Length = 628
Score = 31.5 bits (68), Expect = 0.94
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = +2
Query: 143 IDRGLQTQSNINREVNMTKPIIDDNASNVLKGSNNESDSKAESRDELKPRSPXXIEDGLS 322
++ ++ S N ++M + + NVLK K + +++ E
Sbjct: 349 LESEMKKNSEQNDSIHMARIEQQKSDKNVLKLVEKHKKEKEIALNKILQLEKQLDEKQKL 408
Query: 323 RIETIDFGSTAGVVKEYNGEAV-VENPTDRLTEDINGKENELE 448
+E VV+ GE V V+ TD LTE++N K E+E
Sbjct: 409 ELEIQQLRGRLLVVQHMEGEGVDVKKRTDELTEELNEKIEEME 451
>05_03_0628 - 16367841-16369259
Length = 472
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/83 (27%), Positives = 32/83 (38%)
Frame = +2
Query: 200 PIIDDNASNVLKGSNNESDSKAESRDELKPRSPXXIEDGLSRIETIDFGSTAGVVKEYNG 379
P+ D +A + + S + DE K +S IE +ET D G G
Sbjct: 119 PVTDKSAGSSEVAETEKDGSDLKGSDE-KAKSSDSIEPPSQPVETTDEAKDLGGGSVVAG 177
Query: 380 EAVVENPTDRLTEDINGKENELE 448
EA +N ED KE + E
Sbjct: 178 EAKEDNSKASDIEDKTAKEGDAE 200
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 29.5 bits (63), Expect = 3.8
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = +2
Query: 239 SNNESDSKAESRDELKPRSPXXIEDGLSRIETIDFGSTAGVVKEYNGEAVVENPTDRLTE 418
S E + + E ++ L+ ++ +ED +I+ +D G EY G A + + TE
Sbjct: 147 SEEEEEEEEEDKEGLEDKAGNQVEDEFFKIKDLDKFMVKGEEAEYGGGA-KQGKKKKKTE 205
Query: 419 DINGKENELEPKSNHDFFEGPSIFPIIDCPENCTELDFNEFIFNED---IQSKYKDEYYD 589
N E + + + D E D E+ DF++ E+ YKD +++
Sbjct: 206 --NWMEEDSDEEEEEDLDEDEDNEDEEDDDEHLDLEDFDDEEEEEEGAVGDIMYKD-FFE 262
Query: 590 DAND 601
+A+D
Sbjct: 263 EADD 266
>07_03_1130 - 24187316-24187402,24188365-24188436,24188714-24189379
Length = 274
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 435 SFPLISSVKRSVGFSTTASPLYSLTTPAVLPKSMVSIRLKPSSIXLGL 292
+ P S +S FS ASP YS P +LP + LKP ++ L L
Sbjct: 6 ALPPPPSAPQSPPFSAPASP-YSALHPLLLPSPNPHLLLKPKTLTLSL 52
>12_02_1151 +
26488686-26488792,26488897-26489142,26490246-26490381,
26490502-26490561,26490648-26490740,26491421-26491663,
26491828-26491968,26492312-26492482,26492813-26492899,
26492954-26493211,26493300-26493445,26493535-26493922,
26493935-26494092,26494267-26494540,26494721-26494894
Length = 893
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -2
Query: 519 VQFSGQSMIGKIEGPSKKSWLDLGSNSFSFPLISSVKRSVGFSTTASPLYSLTTPAVLPK 340
V F Q M + +KSW SF PL+SS+ ++ ST + TP +PK
Sbjct: 555 VVFRNQRMESTLTSFGRKSW-----KSFGTPLVSSLPDTINGSTIFELYQKVMTPFRVPK 609
>10_08_0317 - 16697139-16697156,16698319-16698650,16698913-16699033
Length = 156
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 206 IDDNASNVLKGSNNESDSKAESR--DELKPRSPXXIEDGLSR 325
+D AS +++ N E ++ R D++KPR P DG R
Sbjct: 96 VDSKASYLIQIKNPEQPPSSDGRGGDKIKPRGPRSSRDGTDR 137
>12_02_1021 +
25364349-25364465,25367237-25367324,25367851-25368004,
25368196-25368271,25368350-25368475,25369400-25369744
Length = 301
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 554 DIQSKYKDEYYDDANDFFLDASRFKRSVNIIEEENRAVTGSQLQ 685
D+ KYK + N D + +R VNI EE R VTG LQ
Sbjct: 162 DMTQKYKQSTTEYGN-LQDDMNAMRRKVNIAEEAVRRVTGIGLQ 204
>04_03_1001 - 21609280-21610131
Length = 283
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 61 SFGGCGVFQNAFCDSYMCFCTYCTCSCHRS 150
+F GCG + A DS C C CHRS
Sbjct: 38 AFDGCGEYMPASPDSLKC----AACGCHRS 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,480,545
Number of Sequences: 37544
Number of extensions: 338848
Number of successful extensions: 1019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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