Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP16_F_N24
         (901 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF286471-1|AAG00550.1|  316|Homo sapiens retinitis pigmentosa GT...    31   4.3  
AL591423-1|CAM13086.1| 1263|Homo sapiens ADAMTS-like 1 protein.        31   5.7  
AL353895-2|CAM20931.1| 1263|Homo sapiens ADAMTS-like 1 protein.        31   5.7  
AL158150-6|CAM14352.1| 1263|Homo sapiens ADAMTS-like 1 protein.        31   5.7  

>AF286471-1|AAG00550.1|  316|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +2

Query: 146 DRGLQTQSNINREVNMTKPIIDDNASNVLKGSNNESDSKAESRDELKPRSPXXIEDGLSR 325
           DRG+ T+S  N++    +   +    +V+  S  ES  K +S  E    S   I DG  +
Sbjct: 153 DRGMNTESEENKDFVKKR---ESCKQDVIFDSERESVEKPDSYMEGASESQQGIADGFQQ 209

Query: 326 IETIDFGS 349
            E I+F S
Sbjct: 210 PEAIEFSS 217


>AL591423-1|CAM13086.1| 1263|Homo sapiens ADAMTS-like 1 protein.
          Length = 1263

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -2

Query: 216 LSSIIGLVIFTSRLIFDCV*RPRSMTAACTVS--AKTHIRITKC 91
           ++S +GL+I +S L+ DC   P +  +ACTV+    T +RI +C
Sbjct: 8   MASCLGLLILSSCLLADCRFIPEAW-SACTVTCGVGTQVRIVRC 50


>AL353895-2|CAM20931.1| 1263|Homo sapiens ADAMTS-like 1 protein.
          Length = 1263

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -2

Query: 216 LSSIIGLVIFTSRLIFDCV*RPRSMTAACTVS--AKTHIRITKC 91
           ++S +GL+I +S L+ DC   P +  +ACTV+    T +RI +C
Sbjct: 8   MASCLGLLILSSCLLADCRFIPEAW-SACTVTCGVGTQVRIVRC 50


>AL158150-6|CAM14352.1| 1263|Homo sapiens ADAMTS-like 1 protein.
          Length = 1263

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -2

Query: 216 LSSIIGLVIFTSRLIFDCV*RPRSMTAACTVS--AKTHIRITKC 91
           ++S +GL+I +S L+ DC   P +  +ACTV+    T +RI +C
Sbjct: 8   MASCLGLLILSSCLLADCRFIPEAW-SACTVTCGVGTQVRIVRC 50


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,663,059
Number of Sequences: 237096
Number of extensions: 1833597
Number of successful extensions: 4438
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4436
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)